Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 90403590
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|90403590 para-hydroxybenzoate-polyprenyltransferase,
mitochondrial [Homo sapiens]
(384 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|90403590 para-hydroxybenzoate-polyprenyltransferase, mitochon... 791 0.0
gi|17921982 heme A:farnesyltransferase [Homo sapiens] 53 4e-07
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 33 0.33
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ... 32 1.3
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ... 32 1.3
gi|224994251 myotubularin related protein 11 isoform a [Homo sap... 32 1.3
gi|169790811 SHC (Src homology 2 domain containing) transforming... 32 1.3
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens] 31 2.1
gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens] 31 2.1
gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens] 31 2.1
gi|239746769 PREDICTED: similar to Serine/threonine-protein kina... 31 2.1
gi|72534746 tetraspanin 18 isoform 1 [Homo sapiens] 31 2.1
gi|42476204 tetraspanin 18 isoform 2 [Homo sapiens] 31 2.1
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 30 2.8
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 30 3.7
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 30 4.8
gi|24430210 interleukin 17 receptor E isoform 1 [Homo sapiens] 30 4.8
gi|24430206 interleukin 17 receptor E isoform 2 [Homo sapiens] 30 4.8
gi|24430204 interleukin 17 receptor E isoform 1 [Homo sapiens] 30 4.8
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 29 6.2
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 29 6.2
gi|239756892 PREDICTED: hypothetical protein [Homo sapiens] 29 6.2
gi|239756849 PREDICTED: hypothetical protein [Homo sapiens] 29 6.2
gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo ... 29 6.2
gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo ... 29 6.2
gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo ... 29 6.2
gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo ... 29 6.2
gi|219521926 DC-STAMP domain containing 1 isoform 2 [Homo sapiens] 29 8.1
gi|17511255 poly(A) binding protein interacting protein 1 isofor... 29 8.1
>gi|90403590 para-hydroxybenzoate-polyprenyltransferase,
mitochondrial [Homo sapiens]
Length = 384
Score = 791 bits (2042), Expect = 0.0
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MTSIRARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALARAAGAPHGGDLQPPA 60
MTSIRARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALARAAGAPHGGDLQPPA
Sbjct: 1 MTSIRARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALARAAGAPHGGDLQPPA 60
Query: 61 CPEPRGRQLSLSAAAVVDSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFP 120
CPEPRGRQLSLSAAAVVDSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFP
Sbjct: 61 CPEPRGRQLSLSAAAVVDSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFP 120
Query: 121 DWYMLSLFGTGAILMRGAGCTINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQL 180
DWYMLSLFGTGAILMRGAGCTINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQL
Sbjct: 121 DWYMLSLFGTGAILMRGAGCTINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQL 180
Query: 181 TLALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLALGLTFNWGALLGWSAIKGS 240
TLALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLALGLTFNWGALLGWSAIKGS
Sbjct: 181 TLALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLALGLTFNWGALLGWSAIKGS 240
Query: 241 CDPSVCLPLYFSGVMWTLIYDTIYAHQDKRDDVLIGLKSTALRFGENTKPWLSGFSVAML 300
CDPSVCLPLYFSGVMWTLIYDTIYAHQDKRDDVLIGLKSTALRFGENTKPWLSGFSVAML
Sbjct: 241 CDPSVCLPLYFSGVMWTLIYDTIYAHQDKRDDVLIGLKSTALRFGENTKPWLSGFSVAML 300
Query: 301 GALSLVGVNSGQTAPYYAALGAVGAHLTHQIYTLDIHRPEDCWNKFISNRTLGLIVFLGI 360
GALSLVGVNSGQTAPYYAALGAVGAHLTHQIYTLDIHRPEDCWNKFISNRTLGLIVFLGI
Sbjct: 301 GALSLVGVNSGQTAPYYAALGAVGAHLTHQIYTLDIHRPEDCWNKFISNRTLGLIVFLGI 360
Query: 361 VLGNLWKEKKTDKTKKGIENKIEN 384
VLGNLWKEKKTDKTKKGIENKIEN
Sbjct: 361 VLGNLWKEKKTDKTKKGIENKIEN 384
>gi|17921982 heme A:farnesyltransferase [Homo sapiens]
Length = 443
Score = 53.1 bits (126), Expect = 4e-07
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 107 TWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDQDYDKKVTRTANRPIAAGD 166
T + G A PG F DW L G L A +IN ++ +D + RT NRP+ G
Sbjct: 172 TTAAGFALAPGPF-DWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQ 230
Query: 167 IS-----TFQSFVFLGGQLTLALGVLLCLNYYSIALGAGSLLL-VITYPLMKRISY---W 217
IS +F + + G L LGV N + ALG ++ L Y +KRIS W
Sbjct: 231 ISPLLAVSFATCCAVPGVAILTLGV----NPLTGALGLFNIFLYTCCYTPLKRISIANTW 286
Query: 218 PQLALGLTFNWGALLGWSAIKGSCDPSVCL 247
+G ++GW+A GS D L
Sbjct: 287 VGAVVGAI---PPVMGWTAATGSLDAGAFL 313
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 33.5 bits (75), Expect = 0.33
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 4 IRARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALARAAGAPHGGDLQPPACPE 63
+R RPG + G R A ARG A A L RG + G G +P PE
Sbjct: 469 LRGRPGRVAGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGAS-EPEGEPE 527
Query: 64 PRGR 67
PR R
Sbjct: 528 PRAR 531
>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 3 SIRARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALA 45
++R RPGL +A LGSR +G RG A PG RG ALA
Sbjct: 173 AVRPRPGL-AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALA 214
>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
sapiens]
Length = 215
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 3 SIRARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALA 45
++R RPGL +A LGSR +G RG A PG RG ALA
Sbjct: 173 AVRPRPGL-AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALA 214
>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
Length = 215
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 3 SIRARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALA 45
++R RPGL +A LGSR +G RG A PG RG ALA
Sbjct: 173 AVRPRPGL-AARLGSRPSGPLRGAGRGARVRRPGRRGPCGALA 214
>gi|224994251 myotubularin related protein 11 isoform a [Homo
sapiens]
Length = 709
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 36 GWRGRSFALARAAGAPHGGDLQPPACPEPRGRQLSLSAAA 75
G RG+SF +A P G +Q PEPR RQ S A+
Sbjct: 4 GGRGQSFNIAPQKEEPEMGSVQENRMPEPRSRQPSSCLAS 43
>gi|169790811 SHC (Src homology 2 domain containing) transforming
protein 2 [Homo sapiens]
Length = 582
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 36 GWRGRSFALARAAGAPHGGDLQP-PACPEPRGRQLSLSAAAVVDSAPRPLQP 86
G+ GR A ARAAGA G D QP PA P G +L+AA + PR P
Sbjct: 42 GFLGRGPAAARAAGASGGADPQPEPAGP---GGVPALAAAVLGACEPRCAAP 90
>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 264
Score = 30.8 bits (68), Expect = 2.1
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 6 ARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRS--------FALARAAGAPHGGDLQ 57
AR T R GF L+ G RGR AL A AP
Sbjct: 25 ARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPAAS 84
Query: 58 PPACPEPRGRQLSL--SAAAVVDSAPRPLQPYLRLMR 92
+ P PRGR+L L + AA S +PL P LR R
Sbjct: 85 RRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPR 121
>gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 30.8 bits (68), Expect = 2.1
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 6 ARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRS--------FALARAAGAPHGGDLQ 57
AR T R GF L+ G RGR AL A AP
Sbjct: 19 ARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPAAS 78
Query: 58 PPACPEPRGRQLSL--SAAAVVDSAPRPLQPYLRLMR 92
+ P PRGR+L L + AA S +PL P LR R
Sbjct: 79 RRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPR 115
>gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 30.8 bits (68), Expect = 2.1
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 6 ARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRS--------FALARAAGAPHGGDLQ 57
AR T R GF L+ G RGR AL A AP
Sbjct: 19 ARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPAAS 78
Query: 58 PPACPEPRGRQLSL--SAAAVVDSAPRPLQPYLRLMR 92
+ P PRGR+L L + AA S +PL P LR R
Sbjct: 79 RRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPR 115
>gi|239746769 PREDICTED: similar to Serine/threonine-protein kinase
PRKX (Protein kinase PKX1) [Homo sapiens]
Length = 330
Score = 30.8 bits (68), Expect = 2.1
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 6 ARPGLTSAMLGSRAAGFARGLRAVALAWLPGWRGRS--------FALARAAGAPHGGDLQ 57
AR T R GF L+ G RGR AL A AP
Sbjct: 32 ARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPAAS 91
Query: 58 PPACPEPRGRQLSL--SAAAVVDSAPRPLQPYLRLMR 92
+ P PRGR+L L + AA S +PL P LR R
Sbjct: 92 RRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPR 128
>gi|72534746 tetraspanin 18 isoform 1 [Homo sapiens]
Length = 267
Score = 30.8 bits (68), Expect = 2.1
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 170 FQSFVFLGGQLTLALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLALGLTFNWG 229
F F+FLGG LA+G+ + ++ G +V PL+ +Y GL F
Sbjct: 16 FNFFIFLGGACLLAIGIWVMVD------PTGFREIVAANPLLLTGAYILLAMGGLLF--- 66
Query: 230 ALLGWSAIKGSCDPSVCLPLYF 251
LLG+ G+ + CL L+F
Sbjct: 67 -LLGFLGCCGAVRENKCLLLFF 87
>gi|42476204 tetraspanin 18 isoform 2 [Homo sapiens]
Length = 248
Score = 30.8 bits (68), Expect = 2.1
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 170 FQSFVFLGGQLTLALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLALGLTFNWG 229
F F+FLGG LA+G+ + ++ G +V PL+ +Y GL F
Sbjct: 16 FNFFIFLGGACLLAIGIWVMVD------PTGFREIVAANPLLLTGAYILLAMGGLLF--- 66
Query: 230 ALLGWSAIKGSCDPSVCLPLYF 251
LLG+ G+ + CL L+F
Sbjct: 67 -LLGFLGCCGAVRENKCLLLFF 87
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 30.4 bits (67), Expect = 2.8
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 23 ARGLRAVALAWLPG-------WRGRSFALARAAGAPHGGDLQPPACPEPRGR 67
+RGL A A+L G W GR R AGAP GG A P P+GR
Sbjct: 498 SRGLHAFLAAFLSGLLLALSCWGGRR----RRAGAPLGGSGFKGATPLPQGR 545
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 30.0 bits (66), Expect = 3.7
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 43 ALARAAGAPHGGDLQPPACPEPRGRQLSLSAAAVVDSAPRPLQPYLRLMRLDKPIGTWLL 102
+L+RA AP G PPA P RG SL P + L+L ++ W+
Sbjct: 513 SLSRAPSAPPGTGALPPAAPSGRGAAASLRKRKASPEPPDSAEGALKLGE-EQQRQQWMA 571
Query: 103 ----YLPCTWSIGLAAEPG 117
L T S G A PG
Sbjct: 572 NQSEALKLTMSAGGFAAPG 590
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 29.6 bits (65), Expect = 4.8
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 11 TSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALARAAGAPHGGDLQPPACPEPRGRQLS 70
+SA S +A A A A A P AG P L PP P P G S
Sbjct: 129 SSASASSASAAAAAAAAAAAAASSPA--------GLLAGLPRFSSLSPP--PPPPGLYFS 178
Query: 71 LSAAAV--VDSAPRPL 84
SAAAV V P+PL
Sbjct: 179 PSAAAVAAVGRYPKPL 194
>gi|24430210 interleukin 17 receptor E isoform 1 [Homo sapiens]
Length = 667
Score = 29.6 bits (65), Expect = 4.8
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 27 RAVALAWLPGWRGRSFALARAAGAP----HGGDLQPPACPEPRGRQLSLSAAAVVDSAPR 82
R L WL W R+ +AR G G DL+P + P+PR L A++ +APR
Sbjct: 534 RVGPLPWL--WAART-RVAREQGTVLLLWSGADLRPVSGPDPRAAPL----LALLHAAPR 586
Query: 83 PL 84
PL
Sbjct: 587 PL 588
>gi|24430206 interleukin 17 receptor E isoform 2 [Homo sapiens]
Length = 551
Score = 29.6 bits (65), Expect = 4.8
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 27 RAVALAWLPGWRGRSFALARAAGAP----HGGDLQPPACPEPRGRQLSLSAAAVVDSAPR 82
R L WL W R+ +AR G G DL+P + P+PR L A++ +APR
Sbjct: 418 RVGPLPWL--WAART-RVAREQGTVLLLWSGADLRPVSGPDPRAAPL----LALLHAAPR 470
Query: 83 PL 84
PL
Sbjct: 471 PL 472
>gi|24430204 interleukin 17 receptor E isoform 1 [Homo sapiens]
Length = 667
Score = 29.6 bits (65), Expect = 4.8
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 27 RAVALAWLPGWRGRSFALARAAGAP----HGGDLQPPACPEPRGRQLSLSAAAVVDSAPR 82
R L WL W R+ +AR G G DL+P + P+PR L A++ +APR
Sbjct: 534 RVGPLPWL--WAART-RVAREQGTVLLLWSGADLRPVSGPDPRAAPL----LALLHAAPR 586
Query: 83 PL 84
PL
Sbjct: 587 PL 588
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 29.3 bits (64), Expect = 6.2
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 35 PGWRGRSFALARAAGAPHGGDLQPPACPEPRGRQLSLSAAAVV---DSAPRPLQPYLRLM 91
PG RGRS AG P G+ PP P P G + +SA A + + P PLQ M
Sbjct: 1187 PGPRGRS-GETGPAGPP--GNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQ----YM 1239
Query: 92 RLDKPIG 98
R D+ G
Sbjct: 1240 RADQAAG 1246
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 29.3 bits (64), Expect = 6.2
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 35 PGWRGRSFALARAAGAPHGGDLQPPACPEPRGRQLSLSAAAVV---DSAPRPLQPYLRLM 91
PG RGRS AG P G+ PP P P G + +SA A + + P PLQ M
Sbjct: 1118 PGPRGRS-GETGPAGPP--GNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQ----YM 1170
Query: 92 RLDKPIG 98
R D+ G
Sbjct: 1171 RADQAAG 1177
>gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 576
Score = 29.3 bits (64), Expect = 6.2
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 21 GFARGLRAVALAWLPGWRGRSFALARAAGAPHGGDLQ-------PPACPEPRGRQLSLSA 73
G A G + PG R R R+AG PH G PPA P+ G Q A
Sbjct: 260 GAALGEQRAGATTTPGSRRRRRGAGRSAGWPHPGGPSRPTRRNAPPARPDAAGEQCPRPA 319
Query: 74 AA 75
A
Sbjct: 320 GA 321
>gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 29.3 bits (64), Expect = 6.2
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 9 GLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALARAAG 49
G + G RA G A G R + +WLP W LA AAG
Sbjct: 293 GTRAGRQGDRAPGEAGGPRGIGNSWLPHW------LAGAAG 327
>gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo
sapiens]
Length = 404
Score = 29.3 bits (64), Expect = 6.2
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 21 GFARGLRAVALAWLPGWRGRSFALARAAGAPHGGDLQ-------PPACPEPRGRQLSLSA 73
G A G + PG R R R+AG PH G PPA P+ G Q A
Sbjct: 260 GAALGEQRAGATTTPGSRRRRRGAGRSAGWPHPGGPSRPTRRNAPPARPDAAGEQCPRPA 319
Query: 74 AA 75
A
Sbjct: 320 GA 321
>gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo
sapiens]
Length = 329
Score = 29.3 bits (64), Expect = 6.2
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 9 GLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALARAAG 49
G + G RA G A G R + +WLP W LA AAG
Sbjct: 293 GTRAGRQGDRAPGEAGGPRGIGNSWLPHW------LAGAAG 327
>gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo
sapiens]
Length = 404
Score = 29.3 bits (64), Expect = 6.2
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 21 GFARGLRAVALAWLPGWRGRSFALARAAGAPHGGDLQ-------PPACPEPRGRQLSLSA 73
G A G + PG R R R+AG PH G PPA P+ G Q A
Sbjct: 260 GAALGEQRAGATTTPGSRRRRRGAGRSAGWPHPGGPSRPTRRNAPPARPDAAGEQCPRPA 319
Query: 74 AA 75
A
Sbjct: 320 GA 321
>gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo
sapiens]
Length = 329
Score = 29.3 bits (64), Expect = 6.2
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 9 GLTSAMLGSRAAGFARGLRAVALAWLPGWRGRSFALARAAG 49
G + G RA G A G R + +WLP W LA AAG
Sbjct: 293 GTRAGRQGDRAPGEAGGPRGIGNSWLPHW------LAGAAG 327
>gi|219521926 DC-STAMP domain containing 1 isoform 2 [Homo sapiens]
Length = 681
Score = 28.9 bits (63), Expect = 8.1
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 82 RPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAG 139
R QP+ + RL TW L + C+W L +PG FP +L G G +L G G
Sbjct: 14 RRKQPHTTVQRLL----TWGLPVSCSWF--LWRQPGEFPVTALLLGAGAGGLLAIGLG 65
>gi|17511255 poly(A) binding protein interacting protein 1 isoform
1 [Homo sapiens]
Length = 479
Score = 28.9 bits (63), Expect = 8.1
Identities = 18/48 (37%), Positives = 19/48 (39%)
Query: 38 RGRSFALARAAGAPHGGDLQPPACPEPRGRQLSLSAAAVVDSAPRPLQ 85
RGRS L R G P GG A P R R A P PL+
Sbjct: 13 RGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLR 60
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,985,812
Number of Sequences: 37866
Number of extensions: 715367
Number of successful extensions: 2000
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1986
Number of HSP's gapped (non-prelim): 39
length of query: 384
length of database: 18,247,518
effective HSP length: 104
effective length of query: 280
effective length of database: 14,309,454
effective search space: 4006647120
effective search space used: 4006647120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.