Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288009 Sequence: fasta or formatted (215aa) NCBI GI: 239742361
Description:

PREDICTED: hypothetical protein XP_002342502

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         26           4
 C cysteine            1.9          4           1
 D aspartate           0.9          2           1
 E glutamate           2.8          6           1
 F phenylalanine       1.4          3           1
 G glycine            18.1         39           3
 H histidine           1.4          3           1
 I isoleucine          0.0          0           0
 K lysine              1.4          3           1
 L leucine            10.7         23           2
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline            10.2         22           1
 Q glutamine           1.4          3           1
 R arginine           19.1         41           3
 S serine              6.0         13           1
 T threonine           4.2          9           1
 V valine              3.7          8           1
 W tryptophan          3.7          8           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342502 
LOC100293985          1.000   PREDICTED: hypothetical protein 
LOC100289986          1.000   PREDICTED: hypothetical protein XP_002346657 
ARL6IP4               0.044   SRp25 nuclear protein isoform 3 
ARL6IP4               0.035   SRp25 nuclear protein isoform 1 
LOC100293941          0.035   PREDICTED: hypothetical protein 
LOC100290130          0.035   PREDICTED: hypothetical protein XP_002346833 
LOC100287611          0.035   PREDICTED: hypothetical protein XP_002342665 
ELN                   0.033   elastin isoform e precursor 
ELN                   0.033   elastin isoform a precursor 
FLJ31945              0.030   PREDICTED: hypothetical protein 
LOC100290023          0.030   PREDICTED: hypothetical protein XP_002348147 
LOC728351             0.030   PREDICTED: hypothetical protein 
WTIP                  0.030   Wilms tumor 1 interacting protein 
COL2A1                0.028   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.028   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100292773          0.028   PREDICTED: hypothetical protein 
LOC100290783          0.028   PREDICTED: hypothetical protein XP_002347614 
LOC100290063          0.028   PREDICTED: hypothetical protein XP_002346992 
LOC100288864          0.028   PREDICTED: hypothetical protein XP_002343435 
LOC100287283          0.028   PREDICTED: hypothetical protein XP_002342840 
LOC100287283          0.028   PREDICTED: hypothetical protein 
LOC731551             0.028   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.028   PREDICTED: similar to ectonucleotide pyrophosphatas...
ELN                   0.026   elastin isoform b precursor 
LOC100292184          0.026   PREDICTED: hypothetical protein 
LOC100287499          0.026   PREDICTED: hypothetical protein 
LOC100127891          0.026   PREDICTED: similar to hCG2042508 
LOC100287499          0.026   PREDICTED: hypothetical protein XP_002343643 
LOC100127891          0.026   PREDICTED: similar to hCG2042508 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press