Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: COX10 Sequence: fasta or formatted (443aa) NCBI GI: 17921982
Description:

heme A:farnesyltransferase

Referenced in:

Heme
Oxidative Phosphorylation
Prenylation and Related Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         36           3
 C cysteine            2.7         12           2
 D aspartate           2.9         13           1
 E glutamate           3.6         16           2
 F phenylalanine       5.0         22           2
 G glycine             7.0         31           3
 H histidine           2.0          9           1
 I isoleucine          4.5         20           1
 K lysine              4.1         18           1
 L leucine            13.3         59           5
 M methionine          2.3         10           2
 N asparagine          3.4         15           1
 P proline             7.4         33           3
 Q glutamine           2.5         11           2
 R arginine            5.9         26           2
 S serine              8.4         37           2
 T threonine           5.9         26           2
 V valine              6.1         27           2
 W tryptophan          2.3         10           1
 Y tyrosine            2.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heme A:farnesyltransferase 
COQ2                  0.032   para-hydroxybenzoate-polyprenyltransferase, mitochon...
C19orf63              0.014   hematopoietic signal peptide-containing isoform 1 [H...
MACF1                 0.009   microfilament and actin filament cross-linker protei...
MACF1                 0.009   microfilament and actin filament cross-linker protei...
GRM5                  0.009   glutamate receptor, metabotropic 5 isoform a precur...
GRM5                  0.009   glutamate receptor, metabotropic 5 isoform b precurso...
GPR37L1               0.009   G-protein coupled receptor 37 like 1 
KIAA1009              0.007   KIAA1009 protein 
RAD21                 0.006   RAD21 homolog 
EML4                  0.006   echinoderm microtubule associated protein like 4 is...
EML4                  0.006   echinoderm microtubule associated protein like 4 iso...
PRG2                  0.006   proteoglycan 2 preproprotein 
GPR161                0.006   G protein-coupled receptor 161 isoform 2 
DBF4                  0.006   activator of S phase kinase 
LMOD2                 0.006   leiomodin 2 (cardiac) 
MLL2                  0.005   myeloid/lymphoid or mixed-lineage leukemia 2 
OR2T10                0.005   olfactory receptor, family 2, subfamily T, member 10...
MAPK13                0.005   mitogen-activated protein kinase 13 
SLC30A10              0.005   solute carrier family 30 (zinc transporter), member ...
ZNF629                0.005   zinc finger protein 629 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press