Guide to the Human Genome
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Name: LOC389906 Sequence: fasta or formatted (330aa) NCBI GI: 239746769
Description:

PREDICTED: similar to Serine/threonine-protein kinase PRKX (Protein kinase PKX1)

Not currently referenced in the text

Other entries for this name:
alt prot {110aa} PREDICTED: similar to Serine/threonine-protein kinase PRKX (Prote...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.0         56           3
 C cysteine            2.4          8           1
 D aspartate           1.8          6           1
 E glutamate           4.5         15           2
 F phenylalanine       1.8          6           1
 G glycine             8.5         28           2
 H histidine           1.2          4           1
 I isoleucine          0.6          2           1
 K lysine              2.1          7           1
 L leucine             8.8         29           3
 M methionine          0.6          2           1
 N asparagine          1.5          5           1
 P proline            14.2         47           2
 Q glutamine           6.4         21           1
 R arginine           10.0         33           2
 S serine              7.0         23           2
 T threonine           3.9         13           1
 V valine              5.5         18           1
 W tryptophan          1.8          6           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Serine/threonine-protein kina... 
LOC729162             0.911   PREDICTED: similar to hCG1981372 
LOC729162             0.897   PREDICTED: similar to hCG1981372 
LOC100293492          0.719   PREDICTED: hypothetical protein 
ZNF839                0.180   zinc finger protein 839 
PRKX                  0.074   protein kinase, X-linked 
AMOT                  0.043   angiomotin isoform 2 
AMOT                  0.043   angiomotin isoform 1 
TAF4                  0.034   TBP-associated factor 4 
GRIN2D                0.034   N-methyl-D-aspartate receptor subunit 2D precursor ...
C17orf65              0.032   hypothetical protein LOC339201 
LOC100292234          0.031   PREDICTED: hypothetical protein 
LOC100293375          0.031   PREDICTED: hypothetical protein 
LOC100290708          0.031   PREDICTED: hypothetical protein XP_002346660 
LOC100288955          0.031   PREDICTED: hypothetical protein XP_002342507 
SAMD1                 0.031   sterile alpha motif domain containing 1 
GPRIN1                0.031   G protein-regulated inducer of neurite outgrowth 1 ...
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.029   PREDICTED: hypothetical protein LOC80164 
FAM48B1               0.029   hypothetical protein LOC100130302 
CDKN1C                0.029   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.029   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.029   cyclin-dependent kinase inhibitor 1C isoform a 
RAB11FIP3             0.029   rab11-family interacting protein 3 isoform 1 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
LOC729370             0.029   PREDICTED: hypothetical protein 
HS3ST4                0.029   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
RANBP3                0.028   RAN binding protein 3 isoform RANBP3-a 
FLJ37078              0.028   hypothetical protein LOC222183 
ARID1B                0.028   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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