Guide to the Human Genome
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Name: CDRT15L1 Sequence: fasta or formatted (110aa) NCBI GI: 169211692
Description:

PREDICTED: CMT1A duplicated region transcript 15-like 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {110aa} PREDICTED: CMT1A duplicated region transcript 15-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         14           2
 C cysteine            5.5          6           1
 D aspartate           2.7          3           1
 E glutamate           0.9          1           1
 F phenylalanine       0.0          0           0
 G glycine            18.2         20           4
 H histidine           5.5          6           1
 I isoleucine          2.7          3           1
 K lysine              4.5          5           2
 L leucine             0.9          1           1
 M methionine          1.8          2           1
 N asparagine          0.0          0           0
 P proline            12.7         14           1
 Q glutamine           3.6          4           1
 R arginine            4.5          5           2
 S serine             12.7         14           3
 T threonine           7.3          8           2
 V valine              1.8          2           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: CMT1A duplicated region transcript 15-li... 
CDRT15L1              1.000   PREDICTED: CMT1A duplicated region transcript 15-lik...
CDRT15L2              0.982   PREDICTED: CMT1A duplicated region transcript 15-li...
CDRT15L2              0.982   PREDICTED: CMT1A duplicated region transcript 15-lik...
GRASP                 0.069   GRP1 (general receptor for phosphoinositides 1)-asso...
XKR6                  0.055   XK, Kell blood group complex subunit-related family,...
MLL                   0.055   myeloid/lymphoid or mixed-lineage leukemia protein [...
HRNR                  0.041   hornerin 
NFKBIE                0.041   nuclear factor of kappa light polypeptide gene enhan...
EN1                   0.041   engrailed homeobox 1 
RGL4                  0.041   ral guanine nucleotide dissociation stimulator-like ...
SPTY2D1               0.037   SPT2, Suppressor of Ty, domain containing 1 
COL7A1                0.037   alpha 1 type VII collagen precursor 
NR2F1                 0.037   nuclear receptor subfamily 2, group F, member 1 [Homo...
EVX2                  0.037   even-skipped homeobox 2 
FLJ36644              0.032   PREDICTED: hypothetical protein 
LOC100293943          0.032   PREDICTED: hypothetical protein 
LOC100290754          0.032   PREDICTED: hypothetical protein XP_002347676 
LOC100288847          0.032   PREDICTED: hypothetical protein XP_002343470 
LOR                   0.032   loricrin 
BAI1                  0.032   brain-specific angiogenesis inhibitor 1 precursor [...
MEGF6                 0.032   EGF-like-domain, multiple 3 
KRT1                  0.032   keratin 1 
ABL1                  0.032   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.032   c-abl oncogene 1, receptor tyrosine kinase isoform b...
LOC100133756          0.032   PREDICTED: hypothetical protein, partial 
COL17A1               0.032   alpha 1 type XVII collagen 
PRR12                 0.032   proline rich 12 
MAST4                 0.028   microtubule associated serine/threonine kinase fami...
ZNF746                0.028   zinc finger protein 746 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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