Guide to the Human Genome
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Name: LOC100289232 Sequence: fasta or formatted (260aa) NCBI GI: 239747184
Description:

PREDICTED: hypothetical protein XP_002343935

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         12           2
 C cysteine            3.1          8           2
 D aspartate           2.3          6           2
 E glutamate           3.5          9           1
 F phenylalanine       6.5         17           2
 G glycine             4.6         12           2
 H histidine           1.2          3           1
 I isoleucine          8.5         22           2
 K lysine              5.4         14           1
 L leucine            14.6         38           2
 M methionine          2.7          7           1
 N asparagine          6.2         16           2
 P proline             3.1          8           1
 Q glutamine           3.5          9           1
 R arginine            4.2         11           1
 S serine              7.7         20           1
 T threonine           4.6         12           2
 V valine              6.5         17           2
 W tryptophan          2.3          6           1
 Y tyrosine            5.0         13           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343935 
XKR3                  0.988   X Kell blood group precursor-related family, member...
XKRX                  0.445   XK, Kell blood group complex subunit-related, X-lin...
XK                    0.298   membrane transport protein XK 
XKRY                  0.171   XK, Kell blood group complex subunit-related, Y-link...
XKRY2                 0.171   XK, Kell blood group complex subunit-related, Y-link...
XKR6                  0.030   XK, Kell blood group complex subunit-related family,...
XKR4                  0.020   XK, Kell blood group complex subunit-related family,...
TAS2R41               0.016   taste receptor, type 2, member 41 
XKR7                  0.010   XK, Kell blood group complex subunit-related family,...
OR6Q1                 0.010   olfactory receptor, family 6, subfamily Q, member 1...
ADCY5                 0.010   adenylate cyclase 5 
SLC12A4               0.008   solute carrier family 12, member 4 isoform e 
SLC12A4               0.008   solute carrier family 12, member 4 isoform d 
SLC12A4               0.008   solute carrier family 12, member 4 isoform c 
SLC12A4               0.008   solute carrier family 12, member 4 isoform b 
SLC12A4               0.008   solute carrier family 12, member 4 isoform a 
XKR5                  0.006   XK-related protein 5a 
FAM105B               0.006   hypothetical protein LOC90268 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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