Guide to the Human Genome
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Name: XKR5 Sequence: fasta or formatted (339aa) NCBI GI: 118722353
Description:

XK-related protein 5a

Referenced in:

Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         32           2
 C cysteine            1.8          6           1
 D aspartate           3.5         12           1
 E glutamate           2.1          7           1
 F phenylalanine       5.0         17           1
 G glycine             5.9         20           1
 H histidine           4.4         15           1
 I isoleucine          2.4          8           2
 K lysine              1.8          6           1
 L leucine            19.2         65           4
 M methionine          3.5         12           2
 N asparagine          1.2          4           1
 P proline             3.5         12           1
 Q glutamine           5.0         17           2
 R arginine            4.7         16           2
 S serine              6.8         23           2
 T threonine           4.4         15           2
 V valine              6.5         22           2
 W tryptophan          5.6         19           1
 Y tyrosine            3.2         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   XK-related protein 5a 
XKR6                  0.154   XK, Kell blood group complex subunit-related family,...
XKR7                  0.139   XK, Kell blood group complex subunit-related family,...
XKR8                  0.113   XK, Kell blood group complex subunit-related family,...
XKR4                  0.113   XK, Kell blood group complex subunit-related family,...
XKR9                  0.072   XK, Kell blood group complex subunit-related family,...
XK                    0.057   membrane transport protein XK 
XKR3                  0.025   X Kell blood group precursor-related family, member...
SLC22A1               0.015   solute carrier family 22 member 1 isoform b 
SLC22A1               0.015   solute carrier family 22 member 1 isoform a 
CASD1                 0.015   CAS1 domain containing 1 
BIRC6                 0.009   baculoviral IAP repeat-containing 6 
STARD7                0.009   START domain containing 7 
UBR4                  0.007   retinoblastoma-associated factor 600 
LOC100289232          0.004   PREDICTED: hypothetical protein XP_002343935 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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