Guide to the Human Genome
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Name: NBPF3 Sequence: fasta or formatted (633aa) NCBI GI: 14149997
Description:

neuroblastoma breakpoint family, member 3

Referenced in:

Cyclic Nucleotides

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         30           2
 C cysteine            2.2         14           1
 D aspartate           7.9         50           3
 E glutamate          13.7         87           4
 F phenylalanine       3.2         20           2
 G glycine             3.6         23           1
 H histidine           2.7         17           2
 I isoleucine          2.1         13           2
 K lysine              3.8         24           2
 L leucine            10.3         65           2
 M methionine          1.3          8           1
 N asparagine          2.8         18           2
 P proline             6.6         42           2
 Q glutamine           7.6         48           2
 R arginine            5.5         35           1
 S serine              8.4         53           3
 T threonine           3.9         25           2
 V valine              5.4         34           2
 W tryptophan          1.1          7           1
 Y tyrosine            3.2         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuroblastoma breakpoint family, member 3 
NBPF1                 0.638   hypothetical protein LOC55672 
LOC100288142          0.634   PREDICTED: hypothetical protein XP_002344485 
NBPF8                 0.633   PREDICTED: hypothetical protein LOC728841 
NBPF20                0.632   hypothetical protein LOC400818 
NBPF10                0.628   hypothetical protein LOC100132406 
NBPF16                0.624   hypothetical protein LOC728936 
NBPF15                0.622   hypothetical protein LOC284565 
NBPF11                0.614   hypothetical protein LOC728912 
LOC200030             0.614   neuroblastoma breakpoint family, member 11-like [Ho...
NBPF14                0.533   hypothetical protein LOC25832 
NBPF6                 0.348   neuroblastoma breakpoint family, member 6 isoform 1...
NBPF6                 0.341   neuroblastoma breakpoint family, member 6 isoform 2...
NBPF4                 0.341   neuroblastoma breakpoint family, member 4 
NBPF7                 0.334   hypothetical protein LOC343505 
NBPF9                 0.333   PREDICTED: neuroblastoma breakpoint family, member ...
NBPF8                 0.106   PREDICTED: hypothetical protein LOC728841, partial ...
LOC100132057          0.065   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100132057          0.062   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100130000          0.062   PREDICTED: Neuroblastoma breakpoint family member 6...
LOC100130000          0.060   PREDICTED: Neuroblastoma breakpoint family member 6...
PDE4DIP               0.042   phosphodiesterase 4D interacting protein isoform 1 ...
GOLIM4                0.020   golgi integral membrane protein 4 
TCHH                  0.017   trichohyalin 
LOC283685             0.017   PREDICTED: golgi autoantigen, golgin subfamily a-li...
DNAJC21               0.017   DnaJ homology subfamily A member 5 isoform 2 
KIF20B                0.017   M-phase phosphoprotein 1 
ARID4A                0.016   retinoblastoma-binding protein 1 isoform III 
ARID4A                0.016   retinoblastoma-binding protein 1 isoform II 
ARID4A                0.016   retinoblastoma-binding protein 1 isoform I 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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