Guide to the Human Genome
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Name: NBPF1 Sequence: fasta or formatted (1214aa) NCBI GI: 92110019
Description:

hypothetical protein LOC55672

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         61           1
 C cysteine            2.6         31           1
 D aspartate           6.3         76           2
 E glutamate          14.3        174           5
 F phenylalanine       2.4         29           1
 G glycine             3.6         44           2
 H histidine           2.1         25           1
 I isoleucine          2.3         28           2
 K lysine              6.9         84           2
 L leucine            10.5        128           2
 M methionine          1.5         18           1
 N asparagine          3.7         45           1
 P proline             5.2         63           2
 Q glutamine           8.1         98           2
 R arginine            5.6         68           4
 S serine              8.6        104           3
 T threonine           2.8         34           1
 V valine              5.7         69           2
 W tryptophan          0.4          5           1
 Y tyrosine            2.5         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55672 
NBPF20                0.719   hypothetical protein LOC400818 
NBPF10                0.698   hypothetical protein LOC100132406 
LOC100288142          0.695   PREDICTED: hypothetical protein XP_002344485 
LOC200030             0.548   neuroblastoma breakpoint family, member 11-like [Ho...
NBPF11                0.547   hypothetical protein LOC728912 
NBPF16                0.519   hypothetical protein LOC728936 
NBPF15                0.517   hypothetical protein LOC284565 
NBPF8                 0.500   PREDICTED: hypothetical protein LOC728841 
NBPF14                0.438   hypothetical protein LOC25832 
NBPF3                 0.338   neuroblastoma breakpoint family, member 3 
NBPF9                 0.209   PREDICTED: neuroblastoma breakpoint family, member ...
NBPF6                 0.188   neuroblastoma breakpoint family, member 6 isoform 1...
NBPF6                 0.186   neuroblastoma breakpoint family, member 6 isoform 2...
NBPF4                 0.186   neuroblastoma breakpoint family, member 4 
NBPF7                 0.186   hypothetical protein LOC343505 
NBPF8                 0.086   PREDICTED: hypothetical protein LOC728841, partial ...
LOC100132057          0.039   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100132057          0.038   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100130000          0.038   PREDICTED: Neuroblastoma breakpoint family member 6...
LOC100130000          0.037   PREDICTED: Neuroblastoma breakpoint family member 6...
PDE4DIP               0.025   phosphodiesterase 4D interacting protein isoform 1 ...
CCDC136               0.025   coiled-coil domain containing 136 
CEP250                0.021   centrosomal protein 2 
NUMA1                 0.020   nuclear mitotic apparatus protein 1 
CENPE                 0.020   centromere protein E 
GOLGB1                0.019   golgi autoantigen, golgin subfamily b, macrogolgin ...
EEA1                  0.019   early endosome antigen 1, 162kD 
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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