Guide to the Human Genome
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Name: NBPF8 Sequence: fasta or formatted (3815aa) NCBI GI: 169162915
Description:

PREDICTED: hypothetical protein LOC728841

Not currently referenced in the text

Other entries for this name:
alt prot {166aa} PREDICTED: hypothetical protein LOC728841, partial
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.3         89           1
 C cysteine            3.6        137           1
 D aspartate           8.0        307           3
 E glutamate          14.1        538           5
 F phenylalanine       1.3         49           2
 G glycine             6.2        235           1
 H histidine           0.7         27           1
 I isoleucine          1.0         38           2
 K lysine              6.3        239           2
 L leucine            11.7        446           2
 M methionine          0.4         17           1
 N asparagine          0.8         29           1
 P proline             7.7        293           2
 Q glutamine           6.1        232           2
 R arginine            8.0        305           3
 S serine              9.9        378           3
 T threonine           2.1         79           1
 V valine              5.1        196           2
 W tryptophan          0.1          3           1
 Y tyrosine            4.7        178           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC728841 
LOC100288142          0.850   PREDICTED: hypothetical protein XP_002344485 
NBPF10                0.770   hypothetical protein LOC100132406 
NBPF14                0.196   hypothetical protein LOC25832 
NBPF20                0.156   hypothetical protein LOC400818 
NBPF1                 0.155   hypothetical protein LOC55672 
NBPF16                0.153   hypothetical protein LOC728936 
NBPF15                0.153   hypothetical protein LOC284565 
NBPF11                0.129   hypothetical protein LOC728912 
LOC200030             0.129   neuroblastoma breakpoint family, member 11-like [Ho...
NBPF3                 0.104   neuroblastoma breakpoint family, member 3 
NBPF9                 0.065   PREDICTED: neuroblastoma breakpoint family, member ...
NBPF7                 0.060   hypothetical protein LOC343505 
NBPF6                 0.059   neuroblastoma breakpoint family, member 6 isoform 1...
NBPF6                 0.058   neuroblastoma breakpoint family, member 6 isoform 2...
NBPF4                 0.058   neuroblastoma breakpoint family, member 4 
NBPF8                 0.029   PREDICTED: hypothetical protein LOC728841, partial ...
LOC100132057          0.012   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100132057          0.012   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100130000          0.012   PREDICTED: Neuroblastoma breakpoint family member 6...
LOC100130000          0.011   PREDICTED: Neuroblastoma breakpoint family member 6...
PDE4DIP               0.007   phosphodiesterase 4D interacting protein isoform 1 ...
TCHH                  0.006   trichohyalin 
LOC283685             0.006   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GOLIM4                0.004   golgi integral membrane protein 4 
LOC440243             0.004   PREDICTED: Putative golgin subfamily A member 6-lik...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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