Guide to the Human Genome
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Name: NBPF8 Sequence: fasta or formatted (166aa) NCBI GI: 239758011
Description:

PREDICTED: hypothetical protein LOC728841, partial

Not currently referenced in the text

Other entries for this name:
alt prot {3815aa} PREDICTED: hypothetical protein LOC728841
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          5           1
 C cysteine            1.8          3           1
 D aspartate           6.6         11           1
 E glutamate           9.6         16           2
 F phenylalanine       3.0          5           1
 G glycine             8.4         14           1
 H histidine           1.2          2           1
 I isoleucine          3.6          6           1
 K lysine              7.2         12           3
 L leucine            12.7         21           2
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline             5.4          9           2
 Q glutamine           4.8          8           1
 R arginine            8.4         14           3
 S serine              8.4         14           2
 T threonine           3.0          5           1
 V valine              6.0         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC728841, partial ... 
LOC100288142          0.735   PREDICTED: hypothetical protein XP_002344485 
NBPF8                 0.735   PREDICTED: hypothetical protein LOC728841 
NBPF1                 0.665   hypothetical protein LOC55672 
NBPF14                0.665   hypothetical protein LOC25832 
NBPF10                0.645   hypothetical protein LOC100132406 
NBPF20                0.645   hypothetical protein LOC400818 
NBPF16                0.642   hypothetical protein LOC728936 
NBPF15                0.642   hypothetical protein LOC284565 
NBPF3                 0.435   neuroblastoma breakpoint family, member 3 
NBPF11                0.432   hypothetical protein LOC728912 
LOC200030             0.432   neuroblastoma breakpoint family, member 11-like [Ho...
NBPF6                 0.177   neuroblastoma breakpoint family, member 6 isoform 2...
NBPF6                 0.177   neuroblastoma breakpoint family, member 6 isoform 1...
NBPF4                 0.177   neuroblastoma breakpoint family, member 4 
PDE4DIP               0.039   phosphodiesterase 4D interacting protein isoform 1 ...
LOC100294088          0.032   PREDICTED: hypothetical protein, partial 
LOC100133599          0.032   PREDICTED: hypothetical protein 
NBPF7                 0.029   hypothetical protein LOC343505 
NCOR2                 0.023   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.023   nuclear receptor co-repressor 2 isoform 1 
ANKHD1                0.023   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.023   ANKHD1-EIF4EBP3 protein 
CHD4                  0.023   chromodomain helicase DNA binding protein 4 
LOC645490             0.023   PREDICTED: similar to hCG1991922 
HIRIP3                0.023   HIRA interacting protein 3 
IQCA1                 0.023   IQ motif containing with AAA domain 1 
AP3D1                 0.019   adaptor-related protein complex 3, delta 1 subunit ...
BRD7                  0.019   bromodomain containing 7 
TCEAL2                0.019   transcription elongation factor A (SII)-like 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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