Guide to the Human Genome
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Name: NBPF7 Sequence: fasta or formatted (421aa) NCBI GI: 114158664
Description:

hypothetical protein LOC343505

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         21           1
 C cysteine            2.1          9           1
 D aspartate           6.4         27           2
 E glutamate          13.5         57           4
 F phenylalanine       2.6         11           2
 G glycine             3.1         13           1
 H histidine           2.4         10           1
 I isoleucine          2.6         11           1
 K lysine              8.3         35           1
 L leucine             9.5         40           2
 M methionine          1.7          7           1
 N asparagine          5.2         22           1
 P proline             5.0         21           2
 Q glutamine           7.6         32           2
 R arginine            3.6         15           1
 S serine              9.3         39           2
 T threonine           4.3         18           2
 V valine              5.2         22           2
 W tryptophan          1.0          4           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC343505 
NBPF8                 0.561   PREDICTED: hypothetical protein LOC728841 
LOC100288142          0.546   PREDICTED: hypothetical protein XP_002344485 
NBPF1                 0.543   hypothetical protein LOC55672 
NBPF20                0.542   hypothetical protein LOC400818 
NBPF10                0.538   hypothetical protein LOC100132406 
NBPF11                0.537   hypothetical protein LOC728912 
LOC200030             0.537   neuroblastoma breakpoint family, member 11-like [Ho...
NBPF15                0.518   hypothetical protein LOC284565 
NBPF16                0.518   hypothetical protein LOC728936 
NBPF3                 0.515   neuroblastoma breakpoint family, member 3 
NBPF9                 0.485   PREDICTED: neuroblastoma breakpoint family, member ...
NBPF6                 0.485   neuroblastoma breakpoint family, member 6 isoform 1...
NBPF6                 0.475   neuroblastoma breakpoint family, member 6 isoform 2...
NBPF4                 0.475   neuroblastoma breakpoint family, member 4 
NBPF14                0.377   hypothetical protein LOC25832 
LOC100132057          0.124   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100132057          0.122   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100130000          0.122   PREDICTED: Neuroblastoma breakpoint family member 6...
LOC100130000          0.119   PREDICTED: Neuroblastoma breakpoint family member 6...
PDE4DIP               0.068   phosphodiesterase 4D interacting protein isoform 1 ...
GOLIM4                0.039   golgi integral membrane protein 4 
LOC440243             0.036   PREDICTED: Putative golgin subfamily A member 6-lik...
CCDC136               0.032   coiled-coil domain containing 136 
LOC727832             0.032   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.030   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.030   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283767             0.029   golgi autoantigen, golgin subfamily a-like 
KIF20B                0.028   M-phase phosphoprotein 1 
LOC645202             0.028   PREDICTED: hypothetical protein LOC645202 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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