Guide to the Human Genome
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Name: NBPF15 Sequence: fasta or formatted (670aa) NCBI GI: 29789405
Description:

hypothetical protein LOC284565

Referenced in:

Cyclic Nucleotides

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         26           1
 C cysteine            2.5         17           1
 D aspartate           7.0         47           3
 E glutamate          14.5         97           5
 F phenylalanine       2.8         19           2
 G glycine             3.9         26           1
 H histidine           1.9         13           1
 I isoleucine          2.4         16           2
 K lysine              6.6         44           3
 L leucine            10.3         69           2
 M methionine          1.5         10           1
 N asparagine          2.1         14           1
 P proline             5.8         39           2
 Q glutamine           7.2         48           2
 R arginine            6.0         40           3
 S serine              9.0         60           3
 T threonine           2.8         19           1
 V valine              5.7         38           2
 W tryptophan          0.4          3           1
 Y tyrosine            3.7         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284565 
NBPF16                0.992   hypothetical protein LOC728936 
NBPF20                0.948   hypothetical protein LOC400818 
NBPF1                 0.937   hypothetical protein LOC55672 
NBPF10                0.894   hypothetical protein LOC100132406 
NBPF8                 0.891   PREDICTED: hypothetical protein LOC728841 
LOC100288142          0.888   PREDICTED: hypothetical protein XP_002344485 
NBPF14                0.798   hypothetical protein LOC25832 
NBPF11                0.731   hypothetical protein LOC728912 
LOC200030             0.731   neuroblastoma breakpoint family, member 11-like [Ho...
NBPF3                 0.595   neuroblastoma breakpoint family, member 3 
NBPF9                 0.381   PREDICTED: neuroblastoma breakpoint family, member ...
NBPF6                 0.342   neuroblastoma breakpoint family, member 6 isoform 1...
NBPF4                 0.340   neuroblastoma breakpoint family, member 4 
NBPF6                 0.340   neuroblastoma breakpoint family, member 6 isoform 2...
NBPF7                 0.321   hypothetical protein LOC343505 
NBPF8                 0.150   PREDICTED: hypothetical protein LOC728841, partial ...
LOC100132057          0.071   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100132057          0.069   PREDICTED: similar to Neuroblastoma breakpoint fami...
LOC100130000          0.069   PREDICTED: Neuroblastoma breakpoint family member 6...
LOC100130000          0.067   PREDICTED: Neuroblastoma breakpoint family member 6...
PDE4DIP               0.041   phosphodiesterase 4D interacting protein isoform 1 ...
LOC283685             0.031   PREDICTED: golgi autoantigen, golgin subfamily a-li...
GOLIM4                0.028   golgi integral membrane protein 4 
MYH11                 0.026   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.026   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.026   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.026   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CEP250                0.023   centrosomal protein 2 
LOC283685             0.020   PREDICTED: golgi autoantigen, golgin subfamily a-li...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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