Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MTMR11 Sequence: fasta or formatted (640aa) NCBI GI: 89111941
Description:

myotubularin related protein 11 isoform b

Referenced in:

Inositol Pathways

Other entries for this name:
alt prot [709aa] myotubularin related protein 11 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         41           2
 C cysteine            1.6         10           1
 D aspartate           5.0         32           1
 E glutamate           5.2         33           2
 F phenylalanine       4.2         27           2
 G glycine             7.2         46           2
 H histidine           2.5         16           2
 I isoleucine          3.1         20           1
 K lysine              2.0         13           2
 L leucine            13.1         84           3
 M methionine          1.1          7           1
 N asparagine          2.5         16           1
 P proline             8.3         53           2
 Q glutamine           6.1         39           2
 R arginine            8.0         51           2
 S serine              8.8         56           2
 T threonine           4.1         26           1
 V valine              5.6         36           2
 W tryptophan          3.4         22           1
 Y tyrosine            1.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myotubularin related protein 11 isoform b 
MTMR11                0.976   myotubularin related protein 11 isoform a 
MTMR10                0.207   myotubularin related protein 10 
MTMR12                0.141   myotubularin related protein 12 
MTMR9                 0.096   myotubularin related protein 9 
MTMR2                 0.089   myotubularin-related protein 2 isoform 1 
MTMR2                 0.089   myotubularin-related protein 2 isoform 2 
MTMR2                 0.089   myotubularin-related protein 2 isoform 2 
MTMR1                 0.086   myotubularin-related protein 1 
MTM1                  0.078   myotubularin 
MTMR8                 0.064   myotubularin related protein 8 
MTMR4                 0.059   myotubularin related protein 4 
MTMR3                 0.059   myotubularin-related protein 3 isoform b 
MTMR3                 0.059   myotubularin-related protein 3 isoform a 
MTMR3                 0.059   myotubularin-related protein 3 isoform c 
MTMR6                 0.057   myotubularin related protein 6 
MTMR7                 0.053   myotubularin related protein 7 
SBF1                  0.052   SET binding factor 1 
SBF2                  0.051   SET binding factor 2 
LOC100291925          0.008   PREDICTED: hypothetical protein XP_002345110 
LOC100291392          0.008   PREDICTED: hypothetical protein XP_002347851 
LOC100287042          0.008   PREDICTED: hypothetical protein XP_002343584 
MAMSTR                0.005   MEF2 activating motif and SAP domain containing tra...
LOC100291115          0.005   PREDICTED: hypothetical protein XP_002348194 
LOC100287661          0.005   PREDICTED: hypothetical protein XP_002343856 
HSD11B1L              0.005   short-chain dehydrogenase/reductase 10 isoform d [Ho...
HSD11B1L              0.005   short-chain dehydrogenase/reductase 10 isoform a [Ho...
HSD11B1L              0.005   short-chain dehydrogenase/reductase 10 isoform c [Ho...
HSD11B1L              0.005   short-chain dehydrogenase/reductase 10 isoform b [Ho...
LOC100133915          0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press