Guide to the Human Genome
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Name: MTM1 Sequence: fasta or formatted (603aa) NCBI GI: 4557896
Description:

myotubularin

Referenced in:

Inositol Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         29           1
 C cysteine            1.5          9           1
 D aspartate           5.3         32           3
 E glutamate           6.8         41           2
 F phenylalanine       4.5         27           2
 G glycine             4.1         25           3
 H histidine           3.3         20           2
 I isoleucine          6.3         38           3
 K lysine              5.6         34           2
 L leucine             9.6         58           2
 M methionine          2.2         13           2
 N asparagine          5.3         32           1
 P proline             4.6         28           2
 Q glutamine           3.2         19           3
 R arginine            7.1         43           2
 S serine              8.6         52           2
 T threonine           5.0         30           1
 V valine              6.1         37           2
 W tryptophan          1.8         11           1
 Y tyrosine            4.1         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myotubularin 
MTMR2                 0.643   myotubularin-related protein 2 isoform 1 
MTMR2                 0.641   myotubularin-related protein 2 isoform 2 
MTMR2                 0.641   myotubularin-related protein 2 isoform 2 
MTMR1                 0.583   myotubularin-related protein 1 
MTMR6                 0.278   myotubularin related protein 6 
MTMR8                 0.276   myotubularin related protein 8 
MTMR7                 0.266   myotubularin related protein 7 
MTMR3                 0.257   myotubularin-related protein 3 isoform b 
MTMR3                 0.257   myotubularin-related protein 3 isoform a 
MTMR3                 0.257   myotubularin-related protein 3 isoform c 
MTMR4                 0.250   myotubularin related protein 4 
MTMR9                 0.226   myotubularin related protein 9 
MTMR10                0.107   myotubularin related protein 10 
SBF2                  0.100   SET binding factor 2 
SBF1                  0.096   SET binding factor 1 
MTMR12                0.091   myotubularin related protein 12 
MTMR11                0.085   myotubularin related protein 11 isoform a 
MTMR11                0.085   myotubularin related protein 11 isoform b 
MTMR14                0.017   jumpy isoform 3 
MTMR14                0.017   jumpy isoform 1 
MTMR14                0.017   jumpy isoform 2 
DUSP4                 0.010   dual specificity phosphatase 4 isoform 1 
DUSP4                 0.010   dual specificity phosphatase 4 isoform 2 
DUSP7                 0.007   dual specificity phosphatase 7 
DUSP6                 0.007   dual specificity phosphatase 6 isoform a 
DUSP9                 0.007   dual specificity phosphatase 9 
PTPRJ                 0.007   protein tyrosine phosphatase, receptor type, J isof...
ARPP-21               0.006   cyclic AMP-regulated phosphoprotein, 21 kD isoform 1...
DUSP16                0.006   dual specificity phosphatase 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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