Guide to the Human Genome
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Name: LOC100287042 Sequence: fasta or formatted (237aa) NCBI GI: 239745952
Description:

PREDICTED: hypothetical protein XP_002343584

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         29           3
 C cysteine            3.8          9           1
 D aspartate           3.0          7           1
 E glutamate           4.2         10           2
 F phenylalanine       2.1          5           1
 G glycine            11.8         28           2
 H histidine           2.5          6           1
 I isoleucine          0.8          2           1
 K lysine              0.8          2           1
 L leucine             5.5         13           2
 M methionine          1.3          3           1
 N asparagine          1.3          3           1
 P proline            14.8         35           1
 Q glutamine           4.6         11           1
 R arginine            8.4         20           2
 S serine             11.0         26           3
 T threonine           3.4          8           1
 V valine              3.4          8           1
 W tryptophan          3.8          9           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343584 
LOC100291925          0.996   PREDICTED: hypothetical protein XP_002345110 
LOC100291392          0.996   PREDICTED: hypothetical protein XP_002347851 
DUSP8                 0.034   dual specificity phosphatase 8 
TAF4                  0.030   TBP-associated factor 4 
ANKRD56               0.028   ankyrin repeat domain 56 
AATK                  0.028   apoptosis-associated tyrosine kinase 
COL9A3                0.028   alpha 3 type IX collagen 
COL1A1                0.024   alpha 1 type I collagen preproprotein 
COL16A1               0.024   alpha 1 type XVI collagen precursor 
MN1                   0.024   meningioma  1 
GRRP1                 0.024   glycine/arginine rich protein 1 
CDT1                  0.022   chromatin licensing and DNA replication factor 1 [H...
COL4A5                0.022   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.022   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.022   type IV collagen alpha 5 isoform 3 precursor 
ANO8                  0.022   anoctamin 8 
GREB1                 0.022   GREB1 protein isoform a 
COL28A1               0.022   collagen, type XXVIII precursor 
FCN3                  0.020   ficolin 3 isoform 2 precursor 
LOC100291627          0.020   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.020   PREDICTED: hypothetical protein XP_002348034 
COL6A2                0.020   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.020   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.020   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
PRB1                  0.020   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.020   proline-rich protein BstNI subfamily 1 isoform 2 pre...
GLDN                  0.020   gliomedin 
BCL9L                 0.020   B-cell CLL/lymphoma 9-like 
COLQ                  0.020   acetylcholinesterase collagen-like tail subunit iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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