Guide to the Human Genome
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Name: LOC100287661 Sequence: fasta or formatted (160aa) NCBI GI: 239746817
Description:

PREDICTED: hypothetical protein XP_002343856

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         13           2
 C cysteine            2.5          4           1
 D aspartate           1.9          3           1
 E glutamate           2.5          4           1
 F phenylalanine       3.1          5           1
 G glycine            18.1         29           2
 H histidine           0.0          0           0
 I isoleucine          1.2          2           1
 K lysine              1.2          2           1
 L leucine             6.9         11           1
 M methionine          1.2          2           1
 N asparagine          1.9          3           1
 P proline            11.2         18           2
 Q glutamine           0.0          0           0
 R arginine            6.9         11           1
 S serine             18.1         29           3
 T threonine           7.5         12           2
 V valine              5.6          9           2
 W tryptophan          1.9          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343856 
LOC100291115          1.000   PREDICTED: hypothetical protein XP_002348194 
MLL                   0.049   myeloid/lymphoid or mixed-lineage leukemia protein [...
MUC19                 0.043   PREDICTED: mucin 19, oligomeric 
MUC19                 0.043   PREDICTED: mucin 19, oligomeric 
MUC19                 0.043   PREDICTED: mucin 19 
COL1A2                0.043   alpha 2 type I collagen 
SHANK1                0.043   SH3 and multiple ankyrin repeat domains 1 
LOC100289092          0.039   PREDICTED: hypothetical protein isoform 3 
LOC100289092          0.039   PREDICTED: hypothetical protein isoform 2 
LOC100289092          0.039   PREDICTED: hypothetical protein isoform 1 
LOC100289092          0.039   PREDICTED: hypothetical protein XP_002343476 isofor...
LOC100289092          0.039   PREDICTED: hypothetical protein XP_002343475 isofor...
LOC100289092          0.039   PREDICTED: hypothetical protein XP_002343474 isofor...
HRNR                  0.039   hornerin 
CDSN                  0.039   corneodesmosin precursor 
COL9A2                0.039   alpha 2 type IX collagen 
HMX1                  0.039   homeo box (H6 family) 1 
LOC100131098          0.036   PREDICTED: hypothetical protein 
PHACTR2               0.036   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.036   phosphatase and actin regulator 2 isoform 1 
HCN4                  0.033   hyperpolarization activated cyclic nucleotide-gated p...
AGAP2                 0.033   centaurin, gamma 1 isoform PIKE-L 
IRS2                  0.033   insulin receptor substrate 2 
ITPKB                 0.033   1D-myo-inositol-trisphosphate 3-kinase B 
VWCE                  0.033   von Willebrand factor C and EGF domains 
COL5A2                0.033   alpha 2 type V collagen preproprotein 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.033   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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