Guide to the Human Genome
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Name: LOC100288966 Sequence: fasta or formatted (551aa) NCBI GI: 239747116
Description:

PREDICTED: hypothetical protein XP_002343915 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {584aa} PREDICTED: hypothetical protein XP_002343914 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         29           2
 C cysteine            3.1         17           2
 D aspartate           6.4         35           2
 E glutamate          10.0         55           3
 F phenylalanine       1.3          7           1
 G glycine             4.9         27           1
 H histidine           3.3         18           3
 I isoleucine          3.8         21           1
 K lysine              9.1         50           3
 L leucine            10.9         60           3
 M methionine          3.1         17           1
 N asparagine          6.4         35           1
 P proline             2.9         16           1
 Q glutamine           5.3         29           2
 R arginine            5.4         30           2
 S serine              7.6         42           2
 T threonine           3.6         20           1
 V valine              5.1         28           2
 W tryptophan          0.9          5           2
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343915 isofor... 
LOC100288966          0.983   PREDICTED: hypothetical protein XP_002343914 isofor...
POTED                 0.980   pote protein 
POTEB                 0.938   protein expressed in prostate, ovary, testis, and pl...
LOC100287399          0.936   PREDICTED: hypothetical protein XP_002343353 
POTEC                 0.874   ANKRD26-like family B, member 2 
LOC653269             0.831   PREDICTED: similar to protein expressed in prostate...
ACTBL3                0.821   PREDICTED: actin, beta-like 3 
ACTBL3                0.817   PREDICTED: actin, beta-like 3 
ACTBL3                0.817   PREDICTED: kappa-actin 
POTEG                 0.742   POTE ankyrin domain family, member G 
P704P                 0.739   prostate-specific P704P 
POTEH                 0.725   ANKRD26-like family C, member 3 
LOC653781             0.703   PREDICTED: similar to protein expressed in prostate...
POTEF                 0.701   prostate, ovary, testis expressed protein on chromo...
LOC653269             0.699   PREDICTED: similar to protein expressed in prostate,...
POTEE                 0.691   protein expressed in prostate, ovary, testis, and p...
POTEA                 0.550   POTE ankyrin domain family, member A isoform 2 [Homo...
POTEA                 0.467   POTE ankyrin domain family, member A isoform 1 [Homo...
ANKRD62               0.253   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
ANKRD62               0.251   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.251   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD20A3             0.209   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.209   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.209   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.209   ankyrin repeat domain 20 family, member A4 
ANKRD20A5             0.201   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.201   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD18B              0.198   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.198   PREDICTED: ankyrin repeat domain 18B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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