Guide to the Human Genome
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Name: NSUN5B Sequence: fasta or formatted (154aa) NCBI GI: 88758572
Description:

NOL1/NOP2/Sun domain family, member 5B

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt mRNA [154aa] NOL1/NOP2/Sun domain family, member 5B
alt mRNA [154aa] NOL1/NOP2/Sun domain family, member 5B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         22           3
 C cysteine            3.9          6           1
 D aspartate           1.9          3           1
 E glutamate           5.2          8           2
 F phenylalanine       3.9          6           2
 G glycine             5.8          9           2
 H histidine           2.6          4           1
 I isoleucine          0.6          1           1
 K lysine              3.2          5           2
 L leucine             9.1         14           1
 M methionine          2.6          4           1
 N asparagine          1.3          2           1
 P proline            12.3         19           2
 Q glutamine           6.5         10           2
 R arginine            8.4         13           1
 S serine              7.8         12           1
 T threonine           5.8          9           2
 V valine              3.9          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NOL1/NOP2/Sun domain family, member 5B 
NSUN5B                1.000   NOL1/NOP2/Sun domain family, member 5B 
NSUN5B                1.000   NOL1/NOP2/Sun domain family, member 5B 
NSUN5                 0.935   NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom...
NSUN5C                0.877   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho...
NSUN5C                0.877   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho...
NSUN5                 0.678   NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo...
NSUN5C                0.668   NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho...
NSUN7                 0.082   NOL1/NOP2/Sun domain family, member 7 
NSUN2                 0.041   NOL1/NOP2/Sun domain family, member 2 
ANKRD56               0.027   ankyrin repeat domain 56 
NOP2                  0.027   nucleolar protein 1, 120kDa 
NOP2                  0.027   nucleolar protein 1, 120kDa 
LOC284072             0.024   PREDICTED: hypothetical protein 
LOC729506             0.021   PREDICTED: hypothetical protein 
LOC729506             0.021   PREDICTED: hypothetical protein 
LOC284072             0.021   PREDICTED: hypothetical protein 
LOC100288239          0.021   PREDICTED: hypothetical protein XP_002343261 
ABI3BP                0.021   ABI gene family, member 3 (NESH) binding protein [Ho...
ATAD2                 0.017   ATPase family, AAA domain containing 2 
DNM3                  0.017   dynamin 3 isoform a 
DNM3                  0.017   dynamin 3 isoform b 
ITPKB                 0.017   1D-myo-inositol-trisphosphate 3-kinase B 
SSPO                  0.017   SCO-spondin 
LOC284072             0.017   PREDICTED: hypothetical protein 
TAF4                  0.017   TBP-associated factor 4 
CALY                  0.017   dopamine receptor D1 interacting protein 
SYNJ1                 0.017   synaptojanin 1 isoform c 
LOC729506             0.017   PREDICTED: hypothetical protein 
MLL3                  0.017   myeloid/lymphoid or mixed-lineage leukemia 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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