Guide to the Human Genome
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Name: LOC284072 Sequence: fasta or formatted (121aa) NCBI GI: 239745941
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {121aa} PREDICTED: hypothetical protein
alt prot {121aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4          9           2
 C cysteine            0.8          1           1
 D aspartate           0.8          1           1
 E glutamate           5.0          6           1
 F phenylalanine       0.0          0           0
 G glycine            10.7         13           2
 H histidine           2.5          3           1
 I isoleucine          2.5          3           1
 K lysine              5.8          7           1
 L leucine             9.1         11           2
 M methionine          0.8          1           1
 N asparagine          1.7          2           1
 P proline            14.9         18           2
 Q glutamine           5.0          6           2
 R arginine           10.7         13           2
 S serine             11.6         14           1
 T threonine           6.6          8           2
 V valine              4.1          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC284072             0.991   PREDICTED: hypothetical protein 
LOC284072             0.973   PREDICTED: hypothetical protein 
SYN1                  0.072   synapsin I isoform Ia 
SYN1                  0.072   synapsin I isoform Ib 
LOC389333             0.059   hypothetical protein LOC389333 
LOC100131455          0.054   PREDICTED: hypothetical protein 
LOC100131455          0.054   PREDICTED: hypothetical protein 
LOC100131455          0.054   PREDICTED: hypothetical protein 
PRB2                  0.045   proline-rich protein BstNI subfamily 2 
C17orf96              0.045   hypothetical protein LOC100170841 
RPH3A                 0.045   rabphilin 3A homolog isoform 1 
RPH3A                 0.045   rabphilin 3A homolog isoform 2 
NACA                  0.045   nascent polypeptide-associated complex alpha subuni...
PRB1                  0.041   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB1                  0.041   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.041   proline-rich protein BstNI subfamily 1 isoform 2 pre...
OGFR                  0.036   opioid growth factor receptor 
COL19A1               0.036   alpha 1 type XIX collagen precursor 
COL7A1                0.036   alpha 1 type VII collagen precursor 
ZFHX2                 0.032   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.032   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.032   PREDICTED: zinc finger homeobox 2 
COL11A2               0.032   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.032   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.032   collagen, type XI, alpha 2 isoform 1 preproprotein ...
NFATC3                0.032   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.032   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.032   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.032   nuclear factor of activated T-cells, cytoplasmic, cal...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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