Guide to the Human Genome
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Name: NSUN5 Sequence: fasta or formatted (466aa) NCBI GI: 23199998
Description:

NOL1/NOP2/Sun domain family, member 5 isoform 1

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [429aa] NOL1/NOP2/Sun domain family, member 5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         58           4
 C cysteine            2.8         13           2
 D aspartate           4.1         19           2
 E glutamate           4.9         23           2
 F phenylalanine       3.4         16           2
 G glycine             7.3         34           4
 H histidine           3.2         15           1
 I isoleucine          1.5          7           1
 K lysine              4.5         21           2
 L leucine            13.5         63           3
 M methionine          1.1          5           1
 N asparagine          1.7          8           1
 P proline             7.3         34           3
 Q glutamine           4.5         21           2
 R arginine            7.5         35           1
 S serine              7.9         37           2
 T threonine           3.2         15           2
 V valine              6.2         29           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom... 
NSUN5                 0.916   NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo...
NSUN5C                0.499   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho...
NSUN5C                0.499   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho...
NSUN5C                0.432   NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho...
NSUN5B                0.301   NOL1/NOP2/Sun domain family, member 5B 
NSUN5B                0.301   NOL1/NOP2/Sun domain family, member 5B 
NSUN5B                0.301   NOL1/NOP2/Sun domain family, member 5B 
NOP2                  0.093   nucleolar protein 1, 120kDa 
NOP2                  0.093   nucleolar protein 1, 120kDa 
NSUN7                 0.088   NOL1/NOP2/Sun domain family, member 7 
NSUN6                 0.055   NOL1/NOP2/Sun domain family, member 6 
NSUN2                 0.054   NOL1/NOP2/Sun domain family, member 2 
NSUN3                 0.030   NOL1/NOP2/Sun domain family, member 3 
NSUN4                 0.026   NOL1/NOP2/Sun domain family 4 protein 
ANKRD56               0.010   ankyrin repeat domain 56 
SRCAP                 0.009   Snf2-related CBP activator protein 
LTBP2                 0.009   latent transforming growth factor beta binding protei...
DNM3                  0.009   dynamin 3 isoform a 
DNM3                  0.009   dynamin 3 isoform b 
CEBPD                 0.009   CCAAT/enhancer binding protein delta 
ITPKB                 0.008   1D-myo-inositol-trisphosphate 3-kinase B 
SNAPC2                0.008   small nuclear RNA activating complex, polypeptide 2, ...
MLL3                  0.007   myeloid/lymphoid or mixed-lineage leukemia 3 
TPRKB                 0.007   TP53RK binding protein 
EGR4                  0.006   early growth response 4 
C10orf11              0.006   chromosome 10 open reading frame 11 
LMOD1                 0.006   leiomodin 1 (smooth muscle) 
LOC729506             0.006   PREDICTED: hypothetical protein 
LOC729506             0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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