Guide to the Human Genome
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Name: LOC284072 Sequence: fasta or formatted (121aa) NCBI GI: 239756949
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {121aa} PREDICTED: hypothetical protein
alt prot {121aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         10           2
 C cysteine            0.8          1           1
 D aspartate           0.8          1           1
 E glutamate           4.1          5           1
 F phenylalanine       0.0          0           0
 G glycine            10.7         13           2
 H histidine           3.3          4           1
 I isoleucine          2.5          3           1
 K lysine              5.8          7           1
 L leucine             9.1         11           2
 M methionine          0.8          1           1
 N asparagine          1.7          2           1
 P proline            14.9         18           2
 Q glutamine           5.0          6           2
 R arginine           10.7         13           2
 S serine             10.7         13           1
 T threonine           6.6          8           2
 V valine              4.1          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC284072             0.982   PREDICTED: hypothetical protein 
LOC284072             0.968   PREDICTED: hypothetical protein 
SYN1                  0.059   synapsin I isoform Ia 
SYN1                  0.059   synapsin I isoform Ib 
C17orf96              0.054   hypothetical protein LOC100170841 
LOC100131455          0.050   PREDICTED: hypothetical protein 
LOC100131455          0.050   PREDICTED: hypothetical protein 
LOC100131455          0.050   PREDICTED: hypothetical protein 
RPH3A                 0.045   rabphilin 3A homolog isoform 1 
RPH3A                 0.045   rabphilin 3A homolog isoform 2 
PIF1                  0.041   DNA helicase homolog PIF1 
CRTC1                 0.036   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.036   mucoepidermoid carcinoma translocated 1 isoform 1 [...
PRB1                  0.036   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB1                  0.036   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.036   proline-rich protein BstNI subfamily 1 isoform 2 pre...
FMN2                  0.036   formin 2 
PATL1                 0.036   protein associated with topoisomerase II homolog 1 ...
NACA                  0.036   nascent polypeptide-associated complex alpha subuni...
NSUN5C                0.036   NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho...
SOX9                  0.032   transcription factor SOX9 
COL19A1               0.032   alpha 1 type XIX collagen precursor 
PRB2                  0.032   proline-rich protein BstNI subfamily 2 
COL11A2               0.032   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.032   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.032   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL27A1               0.032   collagen, type XXVII, alpha 1 
CD2                   0.032   CD2 molecule 
LOC100132234          0.032   PREDICTED: hypothetical protein LOC100132234 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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