Guide to the Human Genome
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Name: NSUN5C Sequence: fasta or formatted (315aa) NCBI GI: 87298836
Description:

NOL1/NOP2/Sun domain family, member 5C isoform 1

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt mRNA [315aa] NOL1/NOP2/Sun domain family, member 5C isoform 1
alt prot [291aa] NOL1/NOP2/Sun domain family, member 5C isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         39           2
 C cysteine            3.5         11           2
 D aspartate           3.2         10           1
 E glutamate           5.1         16           2
 F phenylalanine       3.8         12           2
 G glycine             5.7         18           2
 H histidine           3.8         12           1
 I isoleucine          1.6          5           1
 K lysine              3.5         11           2
 L leucine            13.0         41           2
 M methionine          2.9          9           1
 N asparagine          1.0          3           1
 P proline            10.2         32           2
 Q glutamine           5.1         16           2
 R arginine            7.3         23           2
 S serine              8.3         26           2
 T threonine           3.8         12           2
 V valine              3.8         12           1
 W tryptophan          1.0          3           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho... 
NSUN5C                1.000   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho...
NSUN5C                0.902   NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho...
NSUN5                 0.731   NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom...
NSUN5                 0.660   NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo...
NSUN5B                0.413   NOL1/NOP2/Sun domain family, member 5B 
NSUN5B                0.413   NOL1/NOP2/Sun domain family, member 5B 
NSUN5B                0.413   NOL1/NOP2/Sun domain family, member 5B 
NOP2                  0.084   nucleolar protein 1, 120kDa 
NOP2                  0.084   nucleolar protein 1, 120kDa 
NSUN7                 0.081   NOL1/NOP2/Sun domain family, member 7 
NSUN2                 0.039   NOL1/NOP2/Sun domain family, member 2 
NSUN6                 0.031   NOL1/NOP2/Sun domain family, member 6 
LOC100293870          0.016   PREDICTED: hypothetical protein 
LOC100289085          0.016   PREDICTED: hypothetical protein XP_002343916 
LOC100288738          0.016   PREDICTED: hypothetical protein XP_002343788 
ANKRD56               0.015   ankyrin repeat domain 56 
CASKIN1               0.013   CASK interacting protein 1 
PHLDB1                0.013   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.013   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.013   pleckstrin homology-like domain, family B, member 1 ...
NCOR2                 0.011   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.011   nuclear receptor co-repressor 2 isoform 1 
LOC284072             0.011   PREDICTED: hypothetical protein 
LOC100132891          0.011   PREDICTED: hypothetical protein 
LOC100132891          0.011   PREDICTED: hypothetical protein 
LOC100132891          0.011   PREDICTED: hypothetical protein 
CEBPD                 0.011   CCAAT/enhancer binding protein delta 
PLXNA3                0.011   plexin A3 
LOC284072             0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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