Guide to the Human Genome
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Name: TFEC Sequence: fasta or formatted (347aa) NCBI GI: 6912702
Description:

transcription factor EC isoform a

Referenced in:

Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt prot [318aa] transcription factor EC isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         21           2
 C cysteine            0.9          3           1
 D aspartate           7.2         25           2
 E glutamate           7.5         26           2
 F phenylalanine       1.7          6           1
 G glycine             5.5         19           2
 H histidine           2.6          9           1
 I isoleucine          5.8         20           2
 K lysine              5.5         19           2
 L leucine            11.8         41           3
 M methionine          2.3          8           1
 N asparagine          3.5         12           1
 P proline             5.5         19           1
 Q glutamine           6.3         22           2
 R arginine            5.8         20           4
 S serine             10.1         35           2
 T threonine           6.3         22           2
 V valine              2.9         10           1
 W tryptophan          1.2          4           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor EC isoform a 
TFEC                  0.893   transcription factor EC isoform b 
MITF                  0.389   microphthalmia-associated transcription factor isofo...
MITF                  0.389   microphthalmia-associated transcription factor isofo...
MITF                  0.389   microphthalmia-associated transcription factor isofo...
MITF                  0.389   microphthalmia-associated transcription factor isofo...
MITF                  0.389   microphthalmia-associated transcription factor isofo...
MITF                  0.380   microphthalmia-associated transcription factor isofor...
TFE3                  0.348   transcription factor E3 
TFEB                  0.338   transcription factor EB 
USF2                  0.045   upstream stimulatory factor 2 isoform 2 
USF2                  0.045   upstream stimulatory factor 2 isoform 1 
KIAA2018              0.038   hypothetical protein LOC205717 
SREBF2                0.038   sterol regulatory element-binding transcription fact...
SREBF1                0.035   sterol regulatory element binding transcription fact...
SREBF1                0.035   sterol regulatory element binding transcription fact...
MXD4                  0.032   MAD4 
USF1                  0.029   upstream stimulatory factor 1 isoform 1 
USF1                  0.029   upstream stimulatory factor 1 isoform 2 
MLX                   0.026   transcription factor-like protein 4 isoform beta [Ho...
ARNTL                 0.024   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.024   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.024   aryl hydrocarbon receptor nuclear translocator-like ...
ARNT                  0.024   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.024   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.024   aryl hydrocarbon receptor nuclear translocator isofor...
MLX                   0.024   transcription factor-like protein 4 isoform gamma [H...
MXI1                  0.024   MAX interactor 1 isoform a 
MXI1                  0.024   MAX interactor 1 isoform b 
MLXIPL                0.021   Williams Beuren syndrome chromosome region 14 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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