Guide to the Human Genome
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Name: TFEC Sequence: fasta or formatted (318aa) NCBI GI: 64762402
Description:

transcription factor EC isoform b

Referenced in:

Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt prot [347aa] transcription factor EC isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         20           2
 C cysteine            0.9          3           1
 D aspartate           6.9         22           2
 E glutamate           6.6         21           2
 F phenylalanine       1.6          5           1
 G glycine             5.3         17           2
 H histidine           2.8          9           1
 I isoleucine          5.3         17           2
 K lysine              5.7         18           2
 L leucine            12.3         39           3
 M methionine          1.6          5           1
 N asparagine          3.8         12           1
 P proline             5.7         18           1
 Q glutamine           6.6         21           2
 R arginine            6.0         19           4
 S serine             10.1         32           2
 T threonine           6.6         21           2
 V valine              2.8          9           1
 W tryptophan          1.3          4           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor EC isoform b 
TFEC                  0.974   transcription factor EC isoform a 
MITF                  0.393   microphthalmia-associated transcription factor isofo...
MITF                  0.393   microphthalmia-associated transcription factor isofo...
MITF                  0.393   microphthalmia-associated transcription factor isofo...
MITF                  0.393   microphthalmia-associated transcription factor isofo...
MITF                  0.393   microphthalmia-associated transcription factor isofo...
MITF                  0.381   microphthalmia-associated transcription factor isofor...
TFEB                  0.347   transcription factor EB 
TFE3                  0.342   transcription factor E3 
USF2                  0.049   upstream stimulatory factor 2 isoform 2 
USF2                  0.049   upstream stimulatory factor 2 isoform 1 
KIAA2018              0.041   hypothetical protein LOC205717 
SREBF2                0.041   sterol regulatory element-binding transcription fact...
SREBF1                0.036   sterol regulatory element binding transcription fact...
SREBF1                0.036   sterol regulatory element binding transcription fact...
MXD4                  0.034   MAD4 
USF1                  0.031   upstream stimulatory factor 1 isoform 1 
USF1                  0.031   upstream stimulatory factor 1 isoform 2 
ARNTL                 0.026   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.026   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.026   aryl hydrocarbon receptor nuclear translocator-like ...
ARNT                  0.026   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.026   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.026   aryl hydrocarbon receptor nuclear translocator isofor...
MXI1                  0.026   MAX interactor 1 isoform a 
MXI1                  0.026   MAX interactor 1 isoform b 
MLXIPL                0.023   Williams Beuren syndrome chromosome region 14 isofor...
MXD3                  0.023   MAX dimerization protein 3 isoform b 
MXD3                  0.023   MAX dimerization protein 3 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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