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Search of human proteins with 84697022
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|84697022 homeobox A1 isoform b [Homo sapiens]
(137 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|84697022 homeobox A1 isoform b [Homo sapiens] 295 6e-81
gi|5031761 homeobox A1 isoform a [Homo sapiens] 258 1e-69
gi|82659115 distal-less homeobox 6 [Homo sapiens] 44 3e-05
gi|24307887 one cut homeobox 1 [Homo sapiens] 44 4e-05
gi|40288197 GATA binding protein 6 [Homo sapiens] 42 1e-04
gi|77681565 NG5 protein [Homo sapiens] 42 2e-04
gi|24497526 homeobox B1 [Homo sapiens] 42 2e-04
gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo ... 42 2e-04
gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo s... 42 2e-04
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 41 3e-04
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 41 4e-04
gi|32307177 forkhead box G1 [Homo sapiens] 41 4e-04
gi|18959212 GS homeobox 2 [Homo sapiens] 41 4e-04
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 40 5e-04
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s... 40 5e-04
gi|122937233 discs, large (Drosophila) homolog-associated protei... 40 5e-04
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 40 5e-04
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 40 6e-04
gi|4557595 forkhead box F2 [Homo sapiens] 40 6e-04
gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens] 39 0.001
gi|55770830 chromobox homolog 4 [Homo sapiens] 39 0.001
gi|119220564 one cut domain, family member 2 [Homo sapiens] 39 0.001
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 39 0.001
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 39 0.001
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 39 0.001
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 39 0.001
gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regula... 39 0.002
gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regula... 39 0.002
gi|110347427 ubiquitin specific protease 34 [Homo sapiens] 39 0.002
gi|134288896 hypothetical protein LOC143684 [Homo sapiens] 39 0.002
>gi|84697022 homeobox A1 isoform b [Homo sapiens]
Length = 137
Score = 295 bits (756), Expect = 6e-81
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ 60
MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
Sbjct: 1 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ 60
Query: 61 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPP 120
IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPP
Sbjct: 61 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPP 120
Query: 121 RSLSLPRIGDIFSSADF 137
RSLSLPRIGDIFSSADF
Sbjct: 121 RSLSLPRIGDIFSSADF 137
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 258 bits (659), Expect = 1e-69
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ 60
MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
Sbjct: 1 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ 60
Query: 61 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEAD 118
IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEAD
Sbjct: 61 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEAD 118
>gi|82659115 distal-less homeobox 6 [Homo sapiens]
Length = 265
Score = 44.3 bits (103), Expect = 3e-05
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 62 GSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGP-SYGSQNFSAPY 108
GS HHHHH HHHH P Y + G G SY+H S Y S + +PY
Sbjct: 56 GSHHHHHHQHHHHGSP--YASGG--GNSYNHRSLAAYPYMSHSQHSPY 99
>gi|24307887 one cut homeobox 1 [Homo sapiens]
Length = 465
Score = 43.9 bits (102), Expect = 4e-05
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 64 PHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPY-----ALNQEAD 118
PHHHHHHHHHH + +GN VS S + G + + Y+PY + Q
Sbjct: 123 PHHHHHHHHHHHPHHHQRLAGN--VSGSFTLMRDERGLASMNNLYTPYHKDVAGMGQSLS 180
Query: 119 PPRSLSLPRIGDIFSS 134
P LS +G I +S
Sbjct: 181 P---LSSSGLGSIHNS 193
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 42.4 bits (98), Expect = 1e-04
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 62 GSPHHHHHHHHHHPQP 77
G+ HHHHHHHHHHP P
Sbjct: 321 GTYHHHHHHHHHHPSP 336
Score = 35.8 bits (81), Expect = 0.011
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 66 HHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPPRSLSL 125
+HHHHHHHH P+ Y Y + P++ + F P ++L A P L +
Sbjct: 323 YHHHHHHHHHHPSPYS-------PYVGAPLTPAWPAGPFETPVL-HSLQSRAGAP--LPV 372
Query: 126 PR 127
PR
Sbjct: 373 PR 374
>gi|77681565 NG5 protein [Homo sapiens]
Length = 306
Score = 42.0 bits (97), Expect = 2e-04
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 63 SPHHHHHHHHHHPQPATYQT--SGNLGVSYSHSSCGPSYGSQNFSAP-YSPYALNQEADP 119
S HHHHHHH+H AT +G L S + + GPS + P ++P A P
Sbjct: 39 SSHHHHHHHYHQSGTATLPRLGAGGLASSAATAQRGPSSSATLPRPPHHAPPGPAAGAPP 98
Query: 120 PRSLSLPRI 128
P +LPR+
Sbjct: 99 PGCATLPRM 107
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 42.0 bits (97), Expect = 2e-04
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 1 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTF-QSCAVSANSCGGDDRFLVGRGV 59
MD RMNSFLEYP+ + G S AY + T+F S A + +S + R+ G
Sbjct: 1 MDYNRMNSFLEYPLCNRGPS------AYSAHSAPTSFPPSSAQAVDSYASEGRY----GG 50
Query: 60 QIGSPHHHHHHHHHHPQPAT-----YQTSGNLGVSYSHSSCGPSYGSQNF 104
+ SP + + QP + + +S G Y+ ++C PSYG +
Sbjct: 51 GLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSG--YAPAACSPSYGPSQY 98
>gi|224586853 sorbin and SH3 domain containing 2 isoform 7 [Homo
sapiens]
Length = 1004
Score = 41.6 bits (96), Expect = 2e-04
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 62 GSPHHHHHHHHHHPQPATYQTSGNLGVSYS 91
GS HHHHHHHHHH + G SY+
Sbjct: 541 GSSHHHHHHHHHHHRHLISSCKGRCPASYT 570
>gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1100
Score = 41.6 bits (96), Expect = 2e-04
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 62 GSPHHHHHHHHHHPQPATYQTSGNLGVSYS 91
GS HHHHHHHHHH + G SY+
Sbjct: 637 GSSHHHHHHHHHHHRHLISSCKGRCPASYT 666
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 41.2 bits (95), Expect = 3e-04
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 62 GSPHHHHHHHHHHPQP 77
G+ HHHHHHHHHH QP
Sbjct: 169 GTHHHHHHHHHHHHQP 184
Score = 37.0 bits (84), Expect = 0.005
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 61 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGS 101
+ HHHHHHHHHH G L H S G + G+
Sbjct: 167 LAGTHHHHHHHHHHHHQPHQALEGEL---LEHLSPGLALGA 204
Score = 27.7 bits (60), Expect = 3.1
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 44 ANSCGGDDRFLVGRGVQIG---------SPHHHHHHHHHHPQPATYQTSGNLGVSYSHSS 94
+N GG D L+ R + S HHH HH ATY T + + + SS
Sbjct: 97 SNIFGGLDESLLARAEALAAVDIVSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTSAASS 156
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 40.8 bits (94), Expect = 4e-04
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 63 SPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALN 114
S HHHHHHHHHH Q G G++++ + C Y +A S + LN
Sbjct: 290 SGHHHHHHHHHH------QGYGGSGLAFNSADC-LDYKEPGAAAASSAWKLN 334
Score = 27.3 bits (59), Expect = 4.0
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 65 HHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAP 107
HHHHHH + + ++ L ++ S NF++P
Sbjct: 296 HHHHHHQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSP 338
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 40.8 bits (94), Expect = 4e-04
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 65 HHHHHHHHHHPQPATYQ 81
HHHHHHHHHHP P Q
Sbjct: 48 HHHHHHHHHHPPPPAPQ 64
Score = 37.0 bits (84), Expect = 0.005
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 64 PHHHHHHHHHHPQP 77
P HHHHHHHHH P
Sbjct: 45 PQHHHHHHHHHHHP 58
Score = 37.0 bits (84), Expect = 0.005
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 65 HHHHHHHHHHPQP 77
HHHHHHHHHH P
Sbjct: 47 HHHHHHHHHHHPP 59
Score = 29.6 bits (65), Expect = 0.81
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 5/21 (23%)
Query: 63 SPHHHHHHHHHH-----PQPA 78
S H HHHHHHH P PA
Sbjct: 42 SHHPQHHHHHHHHHHHPPPPA 62
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 40.8 bits (94), Expect = 4e-04
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 45 NSCGGDDRFLVGRGVQIGSPHHHHH---HHHHHPQPATYQTSGNLGVSYSHSSCGPSYGS 101
+S GD +F ++ HHHHH HHHHH QP ++ + + ++ + G
Sbjct: 110 SSAPGDAQFCP----RVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGH 165
Query: 102 QNFSAPYSPYALNQEADPPR 121
AP ADP R
Sbjct: 166 PQHHAPVCTATTYNVADPRR 185
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 40.4 bits (93), Expect = 5e-04
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 65 HHHHHHHHHHPQP 77
HHHHHHHHHHP P
Sbjct: 2210 HHHHHHHHHHPPP 2222
Score = 36.6 bits (83), Expect = 0.007
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 65 HHHHHHHHHHPQP 77
HHHHHHHHH P P
Sbjct: 2211 HHHHHHHHHPPPP 2223
Score = 29.6 bits (65), Expect = 0.81
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 57 RGVQIGSPHHHHHHHHHH 74
RG H HHHHHHH
Sbjct: 2199 RGRPKDRKHRQHHHHHHH 2216
Score = 28.5 bits (62), Expect = 1.8
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 65 HHHHHHHHHHPQPATYQTS----GNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPP 120
HHHHHHH P Y G S PS G ++ + +++ P
Sbjct: 2213 HHHHHHHPPPPDKDRYAQERPDHGRARARDQRWSRSPSEGREHMAHRQGSSSVSGSPAPS 2272
Query: 121 RS-LSLPRIG 129
S S PR G
Sbjct: 2273 TSGTSTPRRG 2282
>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
sapiens]
Length = 2261
Score = 40.4 bits (93), Expect = 5e-04
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 65 HHHHHHHHHHPQP 77
HHHHHHHHHHP P
Sbjct: 2211 HHHHHHHHHHPPP 2223
Score = 36.6 bits (83), Expect = 0.007
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 65 HHHHHHHHHHPQP 77
HHHHHHHHH P P
Sbjct: 2212 HHHHHHHHHPPPP 2224
Score = 29.6 bits (65), Expect = 0.81
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 57 RGVQIGSPHHHHHHHHHH 74
RG H HHHHHHH
Sbjct: 2200 RGRPKDRKHRQHHHHHHH 2217
Score = 27.7 bits (60), Expect = 3.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 65 HHHHHHHHHHPQPATY 80
HHHHHHH P Y
Sbjct: 2214 HHHHHHHPPPPDKDRY 2229
>gi|122937233 discs, large (Drosophila) homolog-associated protein 3
[Homo sapiens]
Length = 979
Score = 40.4 bits (93), Expect = 5e-04
Identities = 17/29 (58%), Positives = 17/29 (58%)
Query: 48 GGDDRFLVGRGVQIGSPHHHHHHHHHHPQ 76
GGD G G S HHHHHHHHHH Q
Sbjct: 207 GGDSYPGPGSGGPHTSHHHHHHHHHHHHQ 235
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 40.4 bits (93), Expect = 5e-04
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 24/115 (20%)
Query: 26 RAYPSDHRITTFQSCAVSANSCGGD--DRFLVGRGVQIGSPHHHHHHHHHH--------- 74
R+Y + + A +A + G +RF + G PHHHHHHHHHH
Sbjct: 297 RSYKAKAAAAAAAAAAAAAAAAGATCLERFHLVNGF-CPPPHHHHHHHHHHHHHHHRAQP 355
Query: 75 PQ-----PATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPPRSLS 124
PQ P ++ +LG S S S + S+ YS +A N ++D SLS
Sbjct: 356 PQQSHHPPHHHRPQPHLG------SFPESCSSDSESSSYSDHAAN-DSDFGSSLS 403
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 40.0 bits (92), Expect = 6e-04
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 21/72 (29%)
Query: 10 LEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQIGSPHHHHH 69
+ YP LS+ S +C YP++ + Q G HHHHH
Sbjct: 36 MSYPELSTSSS-SCIIAGYPNEEGMFASQH--------------------HRGHHHHHHH 74
Query: 70 HHHHHPQPATYQ 81
HHHHH Q +Q
Sbjct: 75 HHHHHHQQQQHQ 86
Score = 34.7 bits (78), Expect = 0.025
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 65 HHHHHHHHHHPQPATYQTSGNL 86
HHHHHHHH Q QT+ +L
Sbjct: 73 HHHHHHHHQQQQHQALQTNWHL 94
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 40.0 bits (92), Expect = 6e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 43 SANSCGGDDRFLVGRGVQIGSPHHHHHHHHHH-------PQP-ATYQTS-----GNLGVS 89
S GG D G G+P H H HHHHH P P +TY S G GV
Sbjct: 239 SQGGYGGLDMMPAGYDAGAGAPSHAHPHHHHHHHVPHMSPNPGSTYMASCPVPAGPGGVG 298
Query: 90 YSHSSCGPSYGSQNFSAP 107
+ G YG + S+P
Sbjct: 299 AAGGGGGGDYGPDSSSSP 316
>gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens]
Length = 949
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 32/126 (25%)
Query: 19 DSGTCSARAYPSDH--RITTFQSCAVSANSCG----GDDRFLVGRG-------VQIGSPH 65
+S T S ++PS + T SC ++S + F G + +P+
Sbjct: 703 NSNTASPSSHPSTSFANMATLPSCPAPSSSPALSSVPESSFYSSSGGGGSTGNIPASNPN 762
Query: 66 HHHHHHHHH----PQPA----------TYQTSGNLG-----VSYSHSSCGPSYGSQNFSA 106
HHHHHHH PQPA + SG+ G VSY++ P G F+
Sbjct: 763 HHHHHHHQQPPAPPQPAPPPPGCIVCTSCGCSGSCGSSGLTVSYANYFQHPFSGPSVFTF 822
Query: 107 PYSPYA 112
P+ P++
Sbjct: 823 PFLPFS 828
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 38.9 bits (89), Expect = 0.001
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 64 PHHHHHHHHHHPQPATYQTS--GNLGVSYSHSS---CGPSYGSQNFSAPY----SPYALN 114
PHHHHHHHHHH S +S +H C +++ S P SP A
Sbjct: 388 PHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGEREPCKKRLTARSISTPTCLGGSP-AAE 446
Query: 115 QEADPPRSLSLPRIGDIFSSAD 136
+ AD P + +LP+ I +D
Sbjct: 447 RPADLPPAAALPQPEVILLDSD 468
Score = 34.3 bits (77), Expect = 0.033
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 64 PHHHHHHHHHH 74
PH HHHHHHHH
Sbjct: 386 PHPHHHHHHHH 396
Score = 27.3 bits (59), Expect = 4.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 63 SPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSC 95
S H H H HHHH + + L +S+ C
Sbjct: 381 SHHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRC 413
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 38.9 bits (89), Expect = 0.001
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 64 PHHH-HHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPY 111
PHHH HHHHHHH Q + SGN VS S + G + YSPY
Sbjct: 172 PHHHPHHHHHHHHQ----RLSGN--VSGSFTLMRDERGLPAMNNLYSPY 214
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 38.9 bits (89), Expect = 0.001
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 56 GRGVQIGSPHHHHHHHHHHPQPATYQTS 83
GR HHHHHHHHHH Q Q S
Sbjct: 100 GRAPSYHHHHHHHHHHHHHHQQQHQQPS 127
Score = 28.5 bits (62), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 59 VQIGSPHHHHHHHHHH 74
V+ G +HHHHHHH
Sbjct: 97 VEEGRAPSYHHHHHHH 112
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 38.9 bits (89), Expect = 0.001
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 56 GRGVQIGSPHHHHHHHHHHPQPATYQTS 83
GR HHHHHHHHHH Q Q S
Sbjct: 89 GRAPSYHHHHHHHHHHHHHHQQQHQQPS 116
Score = 28.5 bits (62), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 59 VQIGSPHHHHHHHHHH 74
V+ G +HHHHHHH
Sbjct: 86 VEEGRAPSYHHHHHHH 101
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 38.9 bits (89), Expect = 0.001
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 56 GRGVQIGSPHHHHHHHHHHPQPATYQTS 83
GR HHHHHHHHHH Q Q S
Sbjct: 89 GRAPSYHHHHHHHHHHHHHHQQQHQQPS 116
Score = 28.5 bits (62), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 59 VQIGSPHHHHHHHHHH 74
V+ G +HHHHHHH
Sbjct: 86 VEEGRAPSYHHHHHHH 101
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 38.9 bits (89), Expect = 0.001
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 56 GRGVQIGSPHHHHHHHHHHPQPATYQTS 83
GR HHHHHHHHHH Q Q S
Sbjct: 89 GRAPSYHHHHHHHHHHHHHHQQQHQQPS 116
Score = 28.5 bits (62), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 59 VQIGSPHHHHHHHHHH 74
V+ G +HHHHHHH
Sbjct: 86 VEEGRAPSYHHHHHHH 101
>gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 2 [Homo sapiens]
Length = 754
Score = 38.5 bits (88), Expect = 0.002
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 65 HHHHHHHHHHPQPA---------------TYQTSGNLGVSYSHSSCGPSYGSQNFSAPYS 109
HHHHHHHHHH Q A + T ++ V +SH S S S+ S
Sbjct: 601 HHHHHHHHHHGQQALGNRTRPRVYNSPTNSSSTQDSMEVGHSHHSMTSLSSSTTSSSTSS 660
Query: 110 PYALNQ 115
NQ
Sbjct: 661 SSTGNQ 666
Score = 36.6 bits (83), Expect = 0.007
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 62 GSPHHHHHHHHHHPQPATYQTSGN 85
G+ HHHHHHHHH Q GN
Sbjct: 594 GNSSHHHHHHHHHHHHHGQQALGN 617
Score = 26.6 bits (57), Expect = 6.9
Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 4/13 (30%)
Query: 66 HHHH----HHHHH 74
HHHH HHHHH
Sbjct: 590 HHHHGNSSHHHHH 602
>gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 1 [Homo sapiens]
Length = 763
Score = 38.5 bits (88), Expect = 0.002
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 65 HHHHHHHHHHPQPA---------------TYQTSGNLGVSYSHSSCGPSYGSQNFSAPYS 109
HHHHHHHHHH Q A + T ++ V +SH S S S+ S
Sbjct: 610 HHHHHHHHHHGQQALGNRTRPRVYNSPTNSSSTQDSMEVGHSHHSMTSLSSSTTSSSTSS 669
Query: 110 PYALNQ 115
NQ
Sbjct: 670 SSTGNQ 675
Score = 36.6 bits (83), Expect = 0.007
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 62 GSPHHHHHHHHHHPQPATYQTSGN 85
G+ HHHHHHHHH Q GN
Sbjct: 603 GNSSHHHHHHHHHHHHHGQQALGN 626
Score = 26.6 bits (57), Expect = 6.9
Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 4/13 (30%)
Query: 66 HHHH----HHHHH 74
HHHH HHHHH
Sbjct: 599 HHHHGNSSHHHHH 611
>gi|110347427 ubiquitin specific protease 34 [Homo sapiens]
Length = 3546
Score = 38.5 bits (88), Expect = 0.002
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 61 IGSPHHHHHHHHHH 74
IG HHHHHHHHHH
Sbjct: 745 IGPQHHHHHHHHHH 758
Score = 35.4 bits (80), Expect = 0.015
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 60 QIGSPHHHHHHHHHH 74
Q P HHHHHHHHH
Sbjct: 743 QFIGPQHHHHHHHHH 757
Score = 35.4 bits (80), Expect = 0.015
Identities = 10/10 (100%), Positives = 10/10 (100%)
Query: 65 HHHHHHHHHH 74
HHHHHHHHHH
Sbjct: 750 HHHHHHHHHH 759
Score = 35.4 bits (80), Expect = 0.015
Identities = 10/10 (100%), Positives = 10/10 (100%)
Query: 65 HHHHHHHHHH 74
HHHHHHHHHH
Sbjct: 751 HHHHHHHHHH 760
Score = 29.6 bits (65), Expect = 0.81
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 58 GVQIGSPHHHHHHHH 72
G Q HHHHHHHH
Sbjct: 746 GPQHHHHHHHHHHHH 760
Score = 28.1 bits (61), Expect = 2.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 65 HHHHHHHHHH 74
HHHHHHH H
Sbjct: 754 HHHHHHHDGH 763
>gi|134288896 hypothetical protein LOC143684 [Homo sapiens]
Length = 339
Score = 38.5 bits (88), Expect = 0.002
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 65 HHHHHHHHHHPQPATYQTSGNL 86
HHHHHHHHHH +++ NL
Sbjct: 171 HHHHHHHHHHRHSSSHHKISNL 192
Score = 34.7 bits (78), Expect = 0.025
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 64 PHHHHHHHHHH 74
P HHHHHHHHH
Sbjct: 169 PKHHHHHHHHH 179
Score = 28.1 bits (61), Expect = 2.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 65 HHHHHHHHHH 74
HH HHHHHH
Sbjct: 167 HHPKHHHHHH 176
Score = 28.1 bits (61), Expect = 2.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 65 HHHHHHHHHH 74
H HHHHHHH
Sbjct: 168 HPKHHHHHHH 177
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,050,481
Number of Sequences: 37866
Number of extensions: 277186
Number of successful extensions: 2996
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1192
Number of HSP's gapped (non-prelim): 769
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.