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Search of human proteins with 84570137
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|84570137 homeobox B3 [Homo sapiens]
(431 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|84570137 homeobox B3 [Homo sapiens] 919 0.0
gi|24497513 homeobox A3 isoform a [Homo sapiens] 409 e-114
gi|13562112 homeobox A3 isoform a [Homo sapiens] 409 e-114
gi|19923391 homeobox D3 [Homo sapiens] 394 e-109
gi|24497515 homeobox A3 isoform b [Homo sapiens] 320 2e-87
gi|4504465 homeobox B2 [Homo sapiens] 127 2e-29
gi|23397672 homeobox D4 [Homo sapiens] 116 4e-26
gi|10140847 homeobox A2 [Homo sapiens] 115 8e-26
gi|13273315 homeobox B4 [Homo sapiens] 115 8e-26
gi|24497538 homeobox C4 [Homo sapiens] 108 9e-24
gi|24497540 homeobox C4 [Homo sapiens] 108 9e-24
gi|23510368 homeobox D11 [Homo sapiens] 107 2e-23
gi|148613882 homeobox A4 [Homo sapiens] 105 6e-23
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 104 2e-22
gi|24497517 homeobox A5 [Homo sapiens] 104 2e-22
gi|4504469 homeobox B5 [Homo sapiens] 102 7e-22
gi|4503615 even-skipped homeobox 1 [Homo sapiens] 102 9e-22
gi|24497526 homeobox B1 [Homo sapiens] 98 2e-20
gi|194363768 homeobox D9 [Homo sapiens] 97 3e-20
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 97 4e-20
gi|11321638 homeobox C5 [Homo sapiens] 97 4e-20
gi|33457326 GS homeobox 1 [Homo sapiens] 95 1e-19
gi|24497556 homeobox A7 [Homo sapiens] 94 2e-19
gi|27804315 homeobox C12 [Homo sapiens] 94 3e-19
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 93 4e-19
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 93 4e-19
gi|13489077 homeobox A6 [Homo sapiens] 93 5e-19
gi|4502365 NK3 homeobox 2 [Homo sapiens] 92 1e-18
gi|85068580 homeobox B7 [Homo sapiens] 90 3e-18
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 89 6e-18
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 919 bits (2374), Expect = 0.0
Identities = 431/431 (100%), Positives = 431/431 (100%)
Query: 1 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNA 60
MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNA
Sbjct: 1 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNA 60
Query: 61 APHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPG 120
APHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPG
Sbjct: 61 APHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPG 120
Query: 121 TNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDK 180
TNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDK
Sbjct: 121 TNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDK 180
Query: 181 SPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRR 240
SPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRR
Sbjct: 181 SPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRR 240
Query: 241 MKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQN 300
MKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQN
Sbjct: 241 MKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQN 300
Query: 301 AYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYAD 360
AYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYAD
Sbjct: 301 AYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYAD 360
Query: 361 PLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQG 420
PLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQG
Sbjct: 361 PLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQG 420
Query: 421 RIQEAPKLTHL 431
RIQEAPKLTHL
Sbjct: 421 RIQEAPKLTHL 431
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 409 bits (1050), Expect = e-114
Identities = 240/476 (50%), Positives = 289/476 (60%), Gaps = 78/476 (16%)
Query: 1 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQP-PFQAATHLEGDYQRSACSLQSLGN 59
MQKATYYD++A ++GGY Y +NGF ++ QP P AA +G+Y R ACSLQS +
Sbjct: 1 MQKATYYDSSA--IYGGYP-YQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSS 57
Query: 60 AAPHAKSKELNGSCMR---------PGLA------PEPLSAPPGSPPPSAAPTSATSNSS 104
A H K+ EL+ +C+R P L P P +APP PP AP +
Sbjct: 58 AGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPA 117
Query: 105 NGGGPSKSGPPKCG------------PGTNS-TLTKQIFPWMKESRQTSKLKNNSPGTAE 151
PS + PP+ P NS T+ KQIFPWMKESRQ +K K +S + E
Sbjct: 118 APPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGE 177
Query: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211
C G DKSPPG A+SKRARTAYTSAQLVELEKEFHFNR
Sbjct: 178 SCAG-----------------------DKSPPGQASSKRARTAYTSAQLVELEKEFHFNR 214
Query: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS 271
YLCRPRRVEMANLLNL+ERQIKIWFQNRRMKYKKDQK KG+ +SSGG SP+ SP P
Sbjct: 215 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP--G 272
Query: 272 TAGFMNALHSMTPS--YESPSPPAFGKAHQNAYAL-PSNYQPPLKGCGAP----QKYPPT 324
G++N++HS+ S YE SPP F K Q Y L P++Y L C P ++Y
Sbjct: 273 AGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAA 332
Query: 325 PA-----PEYEPHV--LQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLS 377
A P+Y+PH LQ N G+YGTP +QGSPV+V GG Y +P+ +GP+L+GL HL
Sbjct: 333 GAGAGGTPDYDPHAHGLQGN-GSYGTPHIQGSPVFV-GGSYVEPM-SNSGPALFGLTHLP 389
Query: 378 HHPSGNLDYNGAPPMAPSQHH--GPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL 431
H SG +DY GA P+ HH GP EPHPTYTDL+ HH P QGRIQEAPKLTHL
Sbjct: 390 HAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHH--PSQGRIQEAPKLTHL 443
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 409 bits (1050), Expect = e-114
Identities = 240/476 (50%), Positives = 289/476 (60%), Gaps = 78/476 (16%)
Query: 1 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQP-PFQAATHLEGDYQRSACSLQSLGN 59
MQKATYYD++A ++GGY Y +NGF ++ QP P AA +G+Y R ACSLQS +
Sbjct: 1 MQKATYYDSSA--IYGGYP-YQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSS 57
Query: 60 AAPHAKSKELNGSCMR---------PGLA------PEPLSAPPGSPPPSAAPTSATSNSS 104
A H K+ EL+ +C+R P L P P +APP PP AP +
Sbjct: 58 AGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPA 117
Query: 105 NGGGPSKSGPPKCG------------PGTNS-TLTKQIFPWMKESRQTSKLKNNSPGTAE 151
PS + PP+ P NS T+ KQIFPWMKESRQ +K K +S + E
Sbjct: 118 APPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGE 177
Query: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211
C G DKSPPG A+SKRARTAYTSAQLVELEKEFHFNR
Sbjct: 178 SCAG-----------------------DKSPPGQASSKRARTAYTSAQLVELEKEFHFNR 214
Query: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS 271
YLCRPRRVEMANLLNL+ERQIKIWFQNRRMKYKKDQK KG+ +SSGG SP+ SP P
Sbjct: 215 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP--G 272
Query: 272 TAGFMNALHSMTPS--YESPSPPAFGKAHQNAYAL-PSNYQPPLKGCGAP----QKYPPT 324
G++N++HS+ S YE SPP F K Q Y L P++Y L C P ++Y
Sbjct: 273 AGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAA 332
Query: 325 PA-----PEYEPHV--LQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLS 377
A P+Y+PH LQ N G+YGTP +QGSPV+V GG Y +P+ +GP+L+GL HL
Sbjct: 333 GAGAGGTPDYDPHAHGLQGN-GSYGTPHIQGSPVFV-GGSYVEPM-SNSGPALFGLTHLP 389
Query: 378 HHPSGNLDYNGAPPMAPSQHH--GPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL 431
H SG +DY GA P+ HH GP EPHPTYTDL+ HH P QGRIQEAPKLTHL
Sbjct: 390 HAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHH--PSQGRIQEAPKLTHL 443
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 394 bits (1011), Expect = e-109
Identities = 230/454 (50%), Positives = 278/454 (61%), Gaps = 61/454 (13%)
Query: 1 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVP--PQPPFQAATHLEGDYQRSACSLQSLG 58
MQKA YY+N LFGGY ++ +G+ P P PP AA+ L+ DY SACS+QS
Sbjct: 17 MQKAAYYENPG--LFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSA 74
Query: 59 NA-APHAKSKELNGSCMRPGLA----------PEPLSA---PPGSPPPSAAPTSATSNSS 104
AP K ELNGSCMRPG P L++ PP PPP PT S+ +
Sbjct: 75 PLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP--PTLPPSSPT 132
Query: 105 NGGGPSKSGPPKCGPGTNS---TLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGG 161
N GG + PK GP +S T++KQIFPWMKESRQ SK KN+ E C
Sbjct: 133 NPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCE------- 185
Query: 162 GGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEM 221
DKSPPG A SKR RTAYTSAQLVELEKEFHFNRYLCRPRRVEM
Sbjct: 186 -----------------DKSPPGPA-SKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEM 227
Query: 222 ANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHS 281
ANLLNL+ERQIKIWFQNRRMKYKKDQKAKG+ S SP SP P+ AG +
Sbjct: 228 ANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSP--PLGGAAGHVAYSGQ 285
Query: 282 MTP----SYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQAN 337
+ P +Y++PSPPAF K+ N Y L + Y PL C QK APE+EPH + +N
Sbjct: 286 LPPVPGLAYDAPSPPAFAKSQPNMYGLAA-YTAPLSSCLPQQK--RYAAPEFEPHPMASN 342
Query: 338 GGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQH 397
GG + + +QGSPVYV GG + + + P +GP ++ L HLSH S ++DY+ A + + H
Sbjct: 343 GGGFASANLQGSPVYV-GGNFVESMAPASGP-VFNLGHLSHPSSASVDYSCAAQIPGNHH 400
Query: 398 HGPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL 431
HGPC+PHPTYTDLS+HH+ QGR+ EAPKLTHL
Sbjct: 401 HGPCDPHPTYTDLSAHHS--SQGRLPEAPKLTHL 432
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 320 bits (820), Expect = 2e-87
Identities = 178/315 (56%), Positives = 208/315 (66%), Gaps = 46/315 (14%)
Query: 133 MKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRAR 192
MKESRQ +K K +S + E C G DKSPPG A+SKRAR
Sbjct: 1 MKESRQNTKQKTSSSSSGESCAG-----------------------DKSPPGQASSKRAR 37
Query: 193 TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGL 252
TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNL+ERQIKIWFQNRRMKYKKDQK KG+
Sbjct: 38 TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGM 97
Query: 253 ASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPS--YESPSPPAFGKAHQNAYAL-PSNYQ 309
+SSGG SP+ SP P G++N++HS+ S YE SPP F K Q Y L P++Y
Sbjct: 98 LTSSGGQSPSRSPVPP--GAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYP 155
Query: 310 PPLKGCGAP----QKYPPTPA-----PEYEPHV--LQANGGAYGTPTMQGSPVYVGGGGY 358
L C P ++Y A P+Y+PH LQ N G+YGTP +QGSPV+V GG Y
Sbjct: 156 ASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGN-GSYGTPHIQGSPVFV-GGSY 213
Query: 359 ADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHH--GPCEPHPTYTDLSSHHAP 416
+P+ +GP+L+GL HL H SG +DY GA P+ HH GP EPHPTYTDL+ HH
Sbjct: 214 VEPM-SNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHH-- 270
Query: 417 PPQGRIQEAPKLTHL 431
P QGRIQEAPKLTHL
Sbjct: 271 PSQGRIQEAPKLTHL 285
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 127 bits (319), Expect = 2e-29
Identities = 92/264 (34%), Positives = 123/264 (46%), Gaps = 37/264 (14%)
Query: 87 PGSPP-----PSAAPTSATSNSSNGGGPSKSGP---PKCGPGTNSTLTKQIFPWMKESRQ 138
P PP PS P ++T ++ GP P P + FPWMKE +
Sbjct: 44 PPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKS 103
Query: 139 TSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSA 198
K ++ + G G + G G GGGG ++R RTAYT+
Sbjct: 104 AKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGG----------ARRLRTAYTNT 153
Query: 199 QLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAK----GLAS 254
QL+ELEKEFHFN+YLCRPRRVE+A LL+L+ERQ+K+WFQNRRMK+K+ + + G +
Sbjct: 154 QLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPA 213
Query: 255 SSG--------GPSPAGSPPQPMQSTAGFMNALH--SMTPSYESPSPPAFGKAHQNAYAL 304
G PA SP P S A + H + P S P + A A
Sbjct: 214 CPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGA- 272
Query: 305 PSNYQPPLKGCGAPQKYPPTPAPE 328
S+ L+G G + P P PE
Sbjct: 273 -SSPGCALRGAGGLE---PGPLPE 292
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 116 bits (290), Expect = 4e-26
Identities = 97/271 (35%), Positives = 118/271 (43%), Gaps = 69/271 (25%)
Query: 14 LFGGYSSYPGSNGFGFDVPP---QPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSK-EL 69
L GGY G++ +G QPP G Y R Q G + P S
Sbjct: 24 LQGGYLGEQGADYYGGGAQGADFQPP--------GLYPRPDFGEQPFGGSGPGPGSALPA 75
Query: 70 NGSCMRPG------LAP-EPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTN 122
G PG AP EP APP +PPP+ P + S+S P + GT
Sbjct: 76 RGHGQEPGGPGGHYAAPGEPCPAPP-APPPAPLPGARAY--------SQSDPKQPPSGTA 126
Query: 123 STLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSP 182
++PWMK+ S N + G
Sbjct: 127 LKQPAVVYPWMKKVHVNSVNPNYTGGEP-------------------------------- 154
Query: 183 PGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMK 242
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A+ L LSERQIKIWFQNRRMK
Sbjct: 155 ------KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMK 208
Query: 243 YKKDQK---AKGLASSSGGPSPAGSPPQPMQ 270
+KKD K KG +SSS S S P Q
Sbjct: 209 WKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQ 239
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 115 bits (288), Expect = 8e-26
Identities = 66/166 (39%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 92 PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAE 151
PS P S + + G + P L +PWMKE + K A
Sbjct: 57 PSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAA 116
Query: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211
G G GGG S+R RTAYT+ QL+ELEKEFHFN+
Sbjct: 117 ATAAATGPACLSHKESLEIADGSGGG----------SRRLRTAYTNTQLLELEKEFHFNK 166
Query: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSG 257
YLCRPRRVE+A LL+L+ERQ+K+WFQNRRMK+K+ + K +S G
Sbjct: 167 YLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEG 212
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 115 bits (288), Expect = 8e-26
Identities = 86/262 (32%), Positives = 114/262 (43%), Gaps = 65/262 (24%)
Query: 32 PPQPPFQAATHLEGDY--------QRSACSLQ-SLGNAAPHAKSKELNGSCMRPGLAPEP 82
PP + + +L D+ QR S Q G A + + +C PG P P
Sbjct: 18 PPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAACTVQRYAACRDPGPPPPP 77
Query: 83 LSAPPGSPPPSAAPTSATSNSSNGGGP----------SKSGPPKCG-----PGTNSTLTK 127
PP PPP +P + + P S PP C P + + K
Sbjct: 78 PPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACK 137
Query: 128 Q--IFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGS 185
+ ++PWM++ ++ N + G
Sbjct: 138 EPVVYPWMRKVHVSTVNPNYAGGEP----------------------------------- 162
Query: 186 AASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245
KR+RTAYT Q++ELEKEFH+NRYL R RRVE+A+ L LSERQIKIWFQNRRMK+KK
Sbjct: 163 ---KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 219
Query: 246 DQKAKGLASSSGGPS-PAGSPP 266
D K SGG + AG PP
Sbjct: 220 DHKLPNTKIRSGGAAGSAGGPP 241
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 108 bits (270), Expect = 9e-24
Identities = 83/261 (31%), Positives = 115/261 (44%), Gaps = 61/261 (23%)
Query: 32 PPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPP 91
PP PP + + Q S SLQ GN+ H ++ + + EP S
Sbjct: 54 PPPPPRPSYP----ERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASAS 109
Query: 92 PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAE 151
PS AP P+ S P P + ++ ++PWMK+ ++ N + G
Sbjct: 110 PSPAP------------PACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP- 156
Query: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211
KR+RTAYT Q++ELEKEFH+NR
Sbjct: 157 -------------------------------------KRSRTAYTRQQVLELEKEFHYNR 179
Query: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS 271
YL R RR+E+A+ L LSERQIKIWFQNRRMK+KKD + S PAG+ P + +
Sbjct: 180 YLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA--PPAGAAPSTLSA 237
Query: 272 TAGFMNALHSMTPSYESPSPP 292
+ HS +S +PP
Sbjct: 238 ATPGTSEDHS-----QSATPP 253
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 108 bits (270), Expect = 9e-24
Identities = 83/261 (31%), Positives = 115/261 (44%), Gaps = 61/261 (23%)
Query: 32 PPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPP 91
PP PP + + Q S SLQ GN+ H ++ + + EP S
Sbjct: 54 PPPPPRPSYP----ERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASAS 109
Query: 92 PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAE 151
PS AP P+ S P P + ++ ++PWMK+ ++ N + G
Sbjct: 110 PSPAP------------PACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP- 156
Query: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211
KR+RTAYT Q++ELEKEFH+NR
Sbjct: 157 -------------------------------------KRSRTAYTRQQVLELEKEFHYNR 179
Query: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS 271
YL R RR+E+A+ L LSERQIKIWFQNRRMK+KKD + S PAG+ P + +
Sbjct: 180 YLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA--PPAGAAPSTLSA 237
Query: 272 TAGFMNALHSMTPSYESPSPP 292
+ HS +S +PP
Sbjct: 238 ATPGTSEDHS-----QSATPP 253
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 107 bits (267), Expect = 2e-23
Identities = 91/271 (33%), Positives = 118/271 (43%), Gaps = 47/271 (17%)
Query: 3 KATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAP 62
K Y GG SS G G G P+ AA +A + + A
Sbjct: 72 KWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAA---------AAAAAAAAAAAEE 122
Query: 63 HAKSKELNGSC-MRPGL---APEPLSAPPGSP--PPSAAPTSATSNSSNGGGP------- 109
A +EL RP + APEP+ A PG P P AA ++ NG P
Sbjct: 123 AAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGFDQFY 182
Query: 110 -SKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGG--------- 159
+ GPP GP Q P + P T G GGGGG
Sbjct: 183 EAAPGPPFAGP--------QPPPPPAPPQPEGAADKGDPRT--GAGGGGGSPCTKATPGS 232
Query: 160 ---GGGGGSGGSGGGGGGGGGGDKSPPGSAA--SKRARTAYTSAQLVELEKEFHFNRYLC 214
G GSGG G G G G +KS A S++ R YT Q+ ELE+EF FN Y+
Sbjct: 233 EPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYIN 292
Query: 215 RPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245
+ +R++++ +LNL++RQ+KIWFQNRRMK KK
Sbjct: 293 KEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 323
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 105 bits (263), Expect = 6e-23
Identities = 99/310 (31%), Positives = 124/310 (40%), Gaps = 56/310 (18%)
Query: 16 GGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKS-KELNGSCM 74
GG PG G G+ PP PP Q HL + PHA +E S
Sbjct: 30 GGADGGPGG-GPGYQQPPAPPTQ---HLPLQQPQ-----------LPHAGGGREPTASYY 74
Query: 75 RPGLAPEPLSA-----PPGSPPPSAAPTSATSNSSNGGGPSKSGPPKC--GPGTNSTLTK 127
P A EP P +A P +S G P PP GP +
Sbjct: 75 APRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASH 134
Query: 128 QIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPG--- 184
+ P + Q + +P E G GG + DKSP G
Sbjct: 135 VLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA-----DKSPLGLKG 189
Query: 185 ----------------------SAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 222
KR+RTAYT Q++ELEKEFHFNRYL R RR+E+A
Sbjct: 190 KEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIA 249
Query: 223 NLLNLSERQIKIWFQNRRMKYKKDQKAKGL-ASSSGGPSPAGSPPQPMQSTAGFMNALHS 281
+ L LSERQ+KIWFQNRRMK+KKD K SS S + PP Q+ + ++
Sbjct: 250 HTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHP--H 307
Query: 282 MTPSYESPSP 291
PS +P P
Sbjct: 308 PHPSTSTPVP 317
Score = 30.4 bits (67), Expect = 3.2
Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 25/135 (18%)
Query: 257 GGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCG 316
GG SP G PPQP Q A H + S H LP QP
Sbjct: 106 GGASP-GRPPQPEQPPAQAKGPAHGLHAS------------HVLQPQLPPPLQPRAVPPA 152
Query: 317 APQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHL 376
AP++ PA P A G A P + +G G P +Y
Sbjct: 153 APRRCEAAPATPGVP----AGGSAPACPLLLADKSPLGLKG--------KEPVVYPWMKK 200
Query: 377 SHHPSGNLDYNGAPP 391
H + N YNG P
Sbjct: 201 IHVSAVNPSYNGGEP 215
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 104 bits (259), Expect = 2e-22
Identities = 63/149 (42%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Query: 172 GGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 231
G GG + P +KR RTAYT AQL+ELEKEF FN+Y+ RPRRVE+A +LNL+ER
Sbjct: 132 GQWAGGAYAAEPEE--NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERH 189
Query: 232 IKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSP 291
IKIWFQNRRMK+KK++ K ++ G P Q T+G P P
Sbjct: 190 IKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPGGAVP 249
Query: 292 PAFGKAHQNAYALPSNYQPPLKGCGAPQK 320
PA A + P P AP++
Sbjct: 250 PAAPVAAREGRLPPGLSASPQPSSVAPRR 278
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 104 bits (259), Expect = 2e-22
Identities = 50/75 (66%), Positives = 59/75 (78%)
Query: 184 GSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKY 243
G KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L LSERQIKIWFQNRRMK+
Sbjct: 191 GGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKW 250
Query: 244 KKDQKAKGLASSSGG 258
KKD K K ++ ++ G
Sbjct: 251 KKDNKLKSMSMAAAG 265
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 102 bits (254), Expect = 7e-22
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
KRARTAYT Q +ELEKEFHFNRYL R RR+E+A+ L LSERQIKIWFQNRRMK+KKD K
Sbjct: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
Query: 249 AKGLASSSGG 258
K ++ ++ G
Sbjct: 255 LKSMSLATAG 264
>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
Length = 407
Score = 102 bits (253), Expect = 9e-22
Identities = 73/217 (33%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 55 QSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGG--PSKS 112
+++G+ P K + C+ P P P + G P P + S+ G G P +
Sbjct: 29 EAVGSPLPEPPEKMVPRGCLSPRAVP-PATRERGGGGPEEEPVDGLAGSAAGPGAEPQVA 87
Query: 113 GPPKCGPGTNS----TLTKQIFPWMKESR-------QTSKLKNNSPGTAEGCGGGGGGGG 161
G GPG + +L+ Q P ++ + S + + G AE G G
Sbjct: 88 GAAMLGPGPPAPSVDSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHSKGSGSE 147
Query: 162 ---GGGSGGS------GGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRY 212
G +GGS GG GGGG G + S +R RTA+T Q+ LEKEF+ Y
Sbjct: 148 ALVGSPNGGSETPKSNGGSGGGGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENY 207
Query: 213 LCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKA 249
+ RPRR E+A LNL E IK+WFQNRRMK K+ + A
Sbjct: 208 VSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 244
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 97.8 bits (242), Expect = 2e-20
Identities = 78/220 (35%), Positives = 97/220 (44%), Gaps = 59/220 (26%)
Query: 77 GLAPEPLSAPPGSPP------PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIF 130
G P P PP PP S AP A S + P S P +T T + F
Sbjct: 131 GAGPGPY--PPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEP--------NTPTARTF 180
Query: 131 PWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKR 190
WMK +K N P TA+ S PG +
Sbjct: 181 DWMK-------VKRNPPKTAK----------------------------VSEPGLGSPSG 205
Query: 191 ARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAK 250
RT +T+ QL ELEKEFHFN+YL R RRVE+A L L+E Q+KIWFQNRRMK KK ++ +
Sbjct: 206 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREE 265
Query: 251 GLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPS 290
G P+P G P + AG + + T SPS
Sbjct: 266 GRVP----PAPPGCP----KEAAGDASDQSTCTSPEASPS 297
Score = 33.5 bits (75), Expect = 0.38
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 317 APQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHL 376
AP +PP+ A + + A+ G YG SP + GY P PS G+
Sbjct: 27 APTSFPPSSAQAVDSY---ASEGRYGGGL--SSPAFQQNSGY----PAQQPPSTLGVPFP 77
Query: 377 SHHPSGNLDYNGAPPMAPSQHH--GPCEPHPTYTDLSSHHA 415
S PSG +P PSQ++ G E Y SS+ A
Sbjct: 78 SSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGA 118
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 97.1 bits (240), Expect = 3e-20
Identities = 92/281 (32%), Positives = 117/281 (41%), Gaps = 61/281 (21%)
Query: 10 AAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKEL 69
AAAA+ G Y Y VPP PP A+ G Y RS ++ L P
Sbjct: 88 AAAAMSGLYHPY---------VPP-PPLAASASEPGRYVRSW--MEPLPGF-PGGAGGGG 134
Query: 70 NGSCMRPGLAPEPLSAPPGS-------PPPSAAPTSATS----NSSNGGGPSKSGPPKCG 118
G PG P P + P + P AAP AT+ +SS+ S S +C
Sbjct: 135 GGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECS 194
Query: 119 PGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGG 178
S + E S L+ + A GG G G G G + G+GG
Sbjct: 195 VARESQGSSG-----PEFSCNSFLQEKA---AAATGGTGPGAGIGAATGTGGSSEPSACS 246
Query: 179 DKSPPGSA-----------------------------ASKRARTAYTSAQLVELEKEFHF 209
D PG + ++++ R YT Q +ELEKEF F
Sbjct: 247 DHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLF 306
Query: 210 NRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAK 250
N YL R RR E+A +LNL+ERQ+KIWFQNRRMK KK K K
Sbjct: 307 NMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
Score = 40.4 bits (93), Expect = 0.003
Identities = 44/145 (30%), Positives = 56/145 (38%), Gaps = 27/145 (18%)
Query: 71 GSCMRP-GLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSK-------SG------PPK 116
G+ RP G+A P + S AP SA ++S PS+ SG PP
Sbjct: 44 GAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPP 103
Query: 117 CGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG 176
+ S + + WM+ PG G GGGGGGGGGG G G G
Sbjct: 104 PLAASASEPGRYVRSWMEPL----------PGFPGGAGGGGGGGGGGPGRGPSPGPSGPA 153
Query: 177 GGDK---SPPGSAASKRARTAYTSA 198
G P AA A A T++
Sbjct: 154 NGRHYGIKPETRAAPAPATAASTTS 178
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 96.7 bits (239), Expect = 4e-20
Identities = 51/105 (48%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 145 NSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELE 204
++ GT G G G GGSGGSGG GG G G+ +R RTA+T Q+ LE
Sbjct: 149 SAAGTTTSASGSGLGSLHGGSGGSGGSAALGGSGS----GADQVRRYRTAFTREQIARLE 204
Query: 205 KEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKA 249
KEF+ Y+ RPRR E+A LNL E IK+WFQNRRMK K+ + A
Sbjct: 205 KEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 249
Score = 65.5 bits (158), Expect = 9e-11
Identities = 55/196 (28%), Positives = 78/196 (39%), Gaps = 30/196 (15%)
Query: 10 AAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKEL 69
AAAA ++ S+ F + P F+A +H P+++ EL
Sbjct: 295 AAAAAAASGAAAAASSPFATSIRPLDTFRALSH-------------------PYSRP-EL 334
Query: 70 NGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQI 129
S PGL P +A + SAA +A + ++ + PP G S L
Sbjct: 335 LCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCL---- 390
Query: 130 FPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASK 189
S +S+ + A G GGGGGGG GG GGGGG G GG SAA+
Sbjct: 391 ------SCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAP 444
Query: 190 RARTAYTSAQLVELEK 205
R+ + + L K
Sbjct: 445 RSESGFLPYSAAVLSK 460
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 96.7 bits (239), Expect = 4e-20
Identities = 46/62 (74%), Positives = 53/62 (85%)
Query: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
KR+RT+YT Q +ELEKEFHFNRYL R RR+E+AN L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 156 KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215
Query: 249 AK 250
K
Sbjct: 216 MK 217
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 95.1 bits (235), Expect = 1e-19
Identities = 57/128 (44%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 179 DKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQN 238
D S +SKR RTA+TS QL+ELE+EF N YL R RR+E+A LNLSE+Q+KIWFQN
Sbjct: 138 DSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197
Query: 239 RRMKYKKDQKAKG-LASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKA 297
RR+K+KK+ K GG GS PQ + A +A S SP + GK
Sbjct: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCK-CASLSSAKCSEDDDELPMSPSSSGKD 256
Query: 298 HQNAYALP 305
++ P
Sbjct: 257 DRDLTVTP 264
Score = 34.3 bits (77), Expect = 0.22
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 162 GGGSGGSGGGGGGGGGGDKSPPG 184
G GS GGGGGG GGG +P G
Sbjct: 206 GKGSNHRGGGGGGAGGGGSAPQG 228
Score = 32.3 bits (72), Expect = 0.85
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 127 KQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGG 170
KQ+ W Q ++K+ G GGGGGG GGG G
Sbjct: 189 KQVKIWF----QNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQG 228
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 94.0 bits (232), Expect = 2e-19
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Query: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
KR R YT Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KK+ K
Sbjct: 131 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 190
Query: 249 AKGLASSSGGPSPAGSPPQPMQSTA 273
+G +++ +P G+ P + A
Sbjct: 191 DEGPTAAA---APEGAVPSAAATAA 212
>gi|27804315 homeobox C12 [Homo sapiens]
Length = 282
Score = 93.6 bits (231), Expect = 3e-19
Identities = 72/223 (32%), Positives = 93/223 (41%), Gaps = 26/223 (11%)
Query: 28 GFDVPPQPPFQAATHLEG-----DYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEP 82
G V PPF L Y R C+ G + ++ PG A P
Sbjct: 70 GSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAG---PGAALLP 126
Query: 83 LSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKL 142
L P PP + G G +GPP P S ES +S L
Sbjct: 127 LE--PSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSL----------ESDSSSSL 174
Query: 143 KNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVE 202
N EG G G G G GGG G P ++ S++ R Y+ QL E
Sbjct: 175 LN------EGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAE 228
Query: 203 LEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245
LE EF N ++ R RR E+++ LNLS++Q+KIWFQNRRMK K+
Sbjct: 229 LEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKR 271
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 93.2 bits (230), Expect = 4e-19
Identities = 46/79 (58%), Positives = 55/79 (69%)
Query: 186 AASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245
A +R R Y+ Q +ELEKEFHFNRYL R RR+E+AN L L+ERQIKIWFQNRRMK+KK
Sbjct: 57 ADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 116
Query: 246 DQKAKGLASSSGGPSPAGS 264
+ S GG + A S
Sbjct: 117 ESNLTSTLSGGGGGATADS 135
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 93.2 bits (230), Expect = 4e-19
Identities = 46/79 (58%), Positives = 55/79 (69%)
Query: 186 AASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245
A +R R Y+ Q +ELEKEFHFNRYL R RR+E+AN L L+ERQIKIWFQNRRMK+KK
Sbjct: 139 ADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198
Query: 246 DQKAKGLASSSGGPSPAGS 264
+ S GG + A S
Sbjct: 199 ESNLTSTLSGGGGGATADS 217
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 92.8 bits (229), Expect = 5e-19
Identities = 46/74 (62%), Positives = 53/74 (71%)
Query: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
+R R YT Q +ELEKEFHFNRYL R RR+E+AN L L+ERQIKIWFQNRRMK+KK+ K
Sbjct: 156 RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
Query: 249 AKGLASSSGGPSPA 262
SG S A
Sbjct: 216 LINSTQPSGEDSEA 229
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 91.7 bits (226), Expect = 1e-18
Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 95 APTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCG 154
A S + GG G P C + L ++ S + SP T +
Sbjct: 108 ADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGV 167
Query: 155 GGGGGGGGGGSGGSGGGGGGGGGG---DKSPPGSAA--SKRARTAYTSAQLVELEKEFHF 209
G G G+GGGGG G G ++ P + KR+R A++ AQ+ ELE+ F+
Sbjct: 168 GPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNH 227
Query: 210 NRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSS 256
RYL P R ++A L L+E Q+KIWFQNRR K K+ Q A L +S+
Sbjct: 228 QRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASA 274
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 90.1 bits (222), Expect = 3e-18
Identities = 42/63 (66%), Positives = 50/63 (79%)
Query: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
KR R YT Q +ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KK+ K
Sbjct: 138 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
Query: 249 AKG 251
G
Sbjct: 198 TAG 200
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 89.4 bits (220), Expect = 6e-18
Identities = 83/280 (29%), Positives = 113/280 (40%), Gaps = 19/280 (6%)
Query: 98 SATSNSSNGGGPSKSGPPKCGPGTNS--TLTKQIFPWMKESRQTSKLKNNSPGTAEGCGG 155
S S+S++ + P C P S L P +RQ + A G G
Sbjct: 3 SCCSDSADRAFRPRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPG 62
Query: 156 GGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASK--RARTAYTSAQLVELEKEFHFNRYL 213
G GG G+ G ++ S + K RARTA+T QLV LE +F RYL
Sbjct: 63 GAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYL 122
Query: 214 CRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTA 273
R+ +A L+L+E Q+KIWFQNRR K+KK ++ +GG G P
Sbjct: 123 SVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLP 182
Query: 274 GFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHV 333
G ++ L SPSPP + A + P C A + +PA P V
Sbjct: 183 GGLSPL--------SPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA-VLSPFV 233
Query: 334 LQANGGAYGTPTMQG----SPVYVGGGGYADPLPPPAGPS 369
L + YG P SPV + P P GP+
Sbjct: 234 LGSQ--TYGAPAFYAPHLLSPVPLXXXXXXXPPRPLPGPA 271
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.132 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,199,711
Number of Sequences: 37866
Number of extensions: 1870722
Number of successful extensions: 51941
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 1018
Number of HSP's that attempted gapping in prelim test: 16061
Number of HSP's gapped (non-prelim): 17717
length of query: 431
length of database: 18,247,518
effective HSP length: 105
effective length of query: 326
effective length of database: 14,271,588
effective search space: 4652537688
effective search space used: 4652537688
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.