Search of human proteins with 83715964

Search of human proteins with 83715964

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|83715964 high-mobility group 20B [Homo sapiens]
         (317 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|83715964 high-mobility group 20B [Homo sapiens]                    636   0.0  
gi|8922633 high-mobility group 20A [Homo sapiens]                     294   6e-80
gi|226246533 TOX high mobility group box family member 3 isoform...    74   2e-13
gi|226054295 TOX high mobility group box family member 3 isoform...    74   2e-13
gi|169212060 PREDICTED: high mobility group protein B3-like prot...    72   6e-13
gi|239745831 PREDICTED: high mobility group protein B3-like prot...    72   6e-13
gi|7662322 thymus high mobility group box protein TOX [Homo sapi...    71   1e-12
gi|71143137 high-mobility group box 3 [Homo sapiens]                   71   1e-12
gi|4504425 high-mobility group box 1 [Homo sapiens]                    70   2e-12
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]             70   3e-12
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]            69   7e-12
gi|149408144 TOX high mobility group box family member 2 isoform...    68   1e-11
gi|149408141 TOX high mobility group box family member 2 isoform...    68   1e-11
gi|14249636 TOX high mobility group box family member 2 isoform ...    68   1e-11
gi|194688135 high-mobility group box 2 [Homo sapiens]                  67   2e-11
gi|194688133 high-mobility group box 2 [Homo sapiens]                  67   2e-11
gi|11321591 high-mobility group box 2 [Homo sapiens]                   67   2e-11
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]       67   2e-11
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re...    66   4e-11
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho...    65   8e-11
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho...    65   8e-11
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho...    65   8e-11
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho...    64   2e-10
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho...    64   2e-10
gi|239742753 PREDICTED: similar to high mobility group box 3 iso...    64   2e-10
gi|113416897 PREDICTED: similar to high mobility group box 3 iso...    64   2e-10
gi|115529449 upstream binding transcription factor, RNA polymera...    62   5e-10
gi|115529451 upstream binding transcription factor, RNA polymera...    62   5e-10
gi|7657671 upstream binding transcription factor, RNA polymerase...    62   5e-10
gi|4507241 structure specific recognition protein 1 [Homo sapiens]     62   9e-10

>gi|83715964 high-mobility group 20B [Homo sapiens]
          Length = 317

 Score =  636 bits (1640), Expect = 0.0
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK 60
           MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK
Sbjct: 1   MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK 60

Query: 61  KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL 120
           KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL
Sbjct: 61  KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL 120

Query: 121 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF 180
           DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF
Sbjct: 121 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF 180

Query: 181 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL 240
           STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL
Sbjct: 181 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL 240

Query: 241 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK 300
           EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK
Sbjct: 241 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK 300

Query: 301 LIVRIKEILAQVASEHL 317
           LIVRIKEILAQVASEHL
Sbjct: 301 LIVRIKEILAQVASEHL 317


>gi|8922633 high-mobility group 20A [Homo sapiens]
          Length = 347

 Score =  294 bits (753), Expect = 6e-80
 Identities = 146/281 (51%), Positives = 196/281 (69%), Gaps = 3/281 (1%)

Query: 32  QERGEGPRAGEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLNERREQI 88
           Q        G +  HE+E   KRG W KG+KRKK L   N PK+P+TGYVRF+NERREQ+
Sbjct: 62  QSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQL 121

Query: 89  RTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTE 148
           R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K++YMKEL  YQ++EAYK+ + 
Sbjct: 122 RAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSR 181

Query: 149 KIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRK 208
           K Q+++  K            +  K  +    S FD+PIFTEEFL+ +KAREAELR+LRK
Sbjct: 182 KTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLRK 241

Query: 209 MNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPV 268
            N+ FEE+NA LQ+H +SM +A E+LE ++  E  R   LQQ L+ +RQ LT+SFAS+P+
Sbjct: 242 SNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMPL 301

Query: 269 PGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEIL 309
           PG+GETPT+ T+D YM RLH  I  +P  +E  I  ++E++
Sbjct: 302 PGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVV 342


>gi|226246533 TOX high mobility group box family member 3 isoform 2
           [Homo sapiens]
          Length = 571

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 4   GPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRA-GEKGSHEEEPVKKRGWPKGKKR 62
           G   P  + +P   K+        +  +++  E  RA GEK +  +   KK   PK KK+
Sbjct: 187 GASMPHTSPSPPASKSATPSPSSSIN-EEDADEANRAIGEKRAAPDSG-KKPKTPKKKKK 244

Query: 63  KKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDE 122
           K   PN P+ PV+ Y  F  + +  I+ ++P+  F E++K++ + W  L   +KQ Y  +
Sbjct: 245 KD--PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRK 302

Query: 123 AEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKED--------SSSGLMNTLLNGH 172
            E  K++Y+K L AY+ S   K   E  + + I+           +SS L+NT L+ H
Sbjct: 303 TEAAKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLTSSLLLNTPLSQH 360


>gi|226054295 TOX high mobility group box family member 3 isoform 1
           [Homo sapiens]
          Length = 576

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 13/178 (7%)

Query: 4   GPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRA-GEKGSHEEEPVKKRGWPKGKKR 62
           G   P  + +P   K+        +  +++  E  RA GEK +  +   KK   PK KK+
Sbjct: 192 GASMPHTSPSPPASKSATPSPSSSIN-EEDADEANRAIGEKRAAPDSG-KKPKTPKKKKK 249

Query: 63  KKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDE 122
           K   PN P+ PV+ Y  F  + +  I+ ++P+  F E++K++ + W  L   +KQ Y  +
Sbjct: 250 KD--PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRK 307

Query: 123 AEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKED--------SSSGLMNTLLNGH 172
            E  K++Y+K L AY+ S   K   E  + + I+           +SS L+NT L+ H
Sbjct: 308 TEAAKKEYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLTSSLLLNTPLSQH 365


>gi|169212060 PREDICTED: high mobility group protein B3-like
           protein-like [Homo sapiens]
          Length = 207

 Score = 72.0 bits (175), Expect = 6e-13
 Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 46  HEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLG 105
           H ++ +K  G  KG K+K   PN PK P +G+  F +E   + ++ +P +P  ++ K LG
Sbjct: 70  HYDQEIKDYGPAKGGKKKD--PNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLG 127

Query: 106 AEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQ---QSEAYKMCTEKIQEKKIKKED 159
             W  L  +EKQ Y+ +A + K++Y K++  Y+   +S+  K    K+ +KK+++ED
Sbjct: 128 EMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAK-GPAKVAQKKVEEED 183



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPDLP--FPEITKMLGAEWSKLQPTEKQRYLDEAE 124
           P  PK  ++ Y  F+   RE+ + ++P +P  F E +K     W  +   EK ++ + A+
Sbjct: 6   PKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAK 65

Query: 125 REKQQYMKELRAYQQSEAYK 144
            +K  Y +E++ Y  ++  K
Sbjct: 66  ADKVHYDQEIKDYGPAKGGK 85


>gi|239745831 PREDICTED: high mobility group protein B3-like
           protein-like [Homo sapiens]
          Length = 207

 Score = 72.0 bits (175), Expect = 6e-13
 Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 46  HEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLG 105
           H ++ +K  G  KG K+K   PN PK P +G+  F +E   + ++ +P +P  ++ K LG
Sbjct: 70  HYDQEIKDYGPAKGGKKKD--PNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLG 127

Query: 106 AEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQ---QSEAYKMCTEKIQEKKIKKED 159
             W  L  +EKQ Y+ +A + K++Y K++  Y+   +S+  K    K+ +KK+++ED
Sbjct: 128 EMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAK-GPAKVAQKKVEEED 183



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPDLP--FPEITKMLGAEWSKLQPTEKQRYLDEAE 124
           P  PK  ++ Y  F+   RE+ + ++P +P  F E +K     W  +   EK ++ + A+
Sbjct: 6   PKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAK 65

Query: 125 REKQQYMKELRAYQQSEAYK 144
            +K  Y +E++ Y  ++  K
Sbjct: 66  ADKVHYDQEIKDYGPAKGGK 85


>gi|7662322 thymus high mobility group box protein TOX [Homo
           sapiens]
          Length = 526

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 9/151 (5%)

Query: 3   HGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGKKR 62
           + P  PG+ +A     +         T K   GE   A + G   + P         KK+
Sbjct: 203 NSPSPPGSKSATPSPSSSVHEDEGDDTSKINGGEKRPASDMGKKPKTP---------KKK 253

Query: 63  KKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDE 122
           KK  PN P+ PV+ Y  F  + +  I+ ++P+  F E++K++ + W  L   +KQ Y  +
Sbjct: 254 KKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKK 313

Query: 123 AEREKQQYMKELRAYQQSEAYKMCTEKIQEK 153
            E  K++Y+K+L AY+ S   K  +E +  K
Sbjct: 314 TEAAKKEYLKQLAAYRASLVSKSYSEPVDVK 344


>gi|71143137 high-mobility group box 3 [Homo sapiens]
          Length = 200

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 48  EEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAE 107
           +  +K  G  KG K+KK  PN PK P +G+  F +E R +I++ +P +   ++ K LG  
Sbjct: 72  DREMKDYGPAKGGKKKKD-PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEM 130

Query: 108 WSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMC--TEKIQEKKIKKED 159
           W+ L  +EKQ Y+ +A + K++Y K++  Y+    +       K+  KK+++ED
Sbjct: 131 WNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEED 184



 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPDLP--FPEITKMLGAEWSKLQPTEKQRYLDEAE 124
           P  PK  ++ Y  F+   RE+ + ++P++P  F E +K     W  +   EK ++ + A+
Sbjct: 6   PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAK 65

Query: 125 REKQQYMKELRAYQQSEAYK 144
            +K +Y +E++ Y  ++  K
Sbjct: 66  ADKVRYDREMKDYGPAKGGK 85


>gi|4504425 high-mobility group box 1 [Homo sapiens]
          Length = 215

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 14/141 (9%)

Query: 33  ERGEGPRAGEKGSHE----------EEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRFL 81
           ER +   A EKG  E          E  +K    PKG+ +KK   PN PK P + +  F 
Sbjct: 47  ERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFC 106

Query: 82  NERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQ--- 138
           +E R +I+  HP L   ++ K LG  W+     +KQ Y  +A + K++Y K++ AY+   
Sbjct: 107 SEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166

Query: 139 QSEAYKMCTEKIQEKKIKKED 159
           + +A K    K ++ K KKE+
Sbjct: 167 KPDAAKKGVVKAEKSKKKKEE 187



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
           P  P+  ++ Y  F+   RE+ + +HPD  + F E +K     W  +   EK ++ D A+
Sbjct: 6   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65

Query: 125 REKQQYMKELRAY 137
            +K +Y +E++ Y
Sbjct: 66  ADKARYEREMKTY 78


>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
          Length = 879

 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 4/119 (3%)

Query: 45  SHEEEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKM 103
           +H E  +K    PKG+K+KK   PN PK P   +  F +E R +I+  HP L   ++ K 
Sbjct: 743 AHYEREMKTYIPPKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKK 802

Query: 104 LGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQ---QSEAYKMCTEKIQEKKIKKED 159
           L   W+     +KQ Y  +A + K++Y K++ AY+   +  + K    K ++ K KKE+
Sbjct: 803 LAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEE 861


>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
          Length = 211

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 14/141 (9%)

Query: 33  ERGEGPRAGEKG----------SHEEEPVKKRGWPKGKKRKKIL-PNGPKAPVTGYVRFL 81
           ER +   A EKG          +H E  +K    PKG+ +KK   PN PK P + +  F 
Sbjct: 47  ERWKTMSAKEKGKFEDMAKADKTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFC 106

Query: 82  NERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQ--- 138
           +E   +I+  HP L   ++ K LG  W+     +KQ    +A + K++Y K++ AYQ   
Sbjct: 107 SEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKG 166

Query: 139 QSEAYKMCTEKIQEKKIKKED 159
           + EA K    K ++ K KKE+
Sbjct: 167 KPEAAKKGVVKAEKSKKKKEE 187



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
           P  P+  ++ Y  F+   RE+ + +H D  + F E +      W  +   EK ++ D A+
Sbjct: 6   PKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMAK 65

Query: 125 REKQQYMKELRAY 137
            +K  Y ++++ Y
Sbjct: 66  ADKTHYERQMKTY 78


>gi|149408144 TOX high mobility group box family member 2 isoform a
           [Homo sapiens]
          Length = 506

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 5   PKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGKKRKK 64
           P  PG+ +A     +  Q     V  K    + P A        +P KK   PK KK+K 
Sbjct: 191 PSPPGSKSATPSPSSSTQEEESEVHFKISGEKRPSA--------DPGKKAKNPKKKKKKD 242

Query: 65  ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
             PN P+ PV+ Y  F  + +  I+ ++P   F +++K++ + W  L   +KQ Y  + E
Sbjct: 243 --PNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTE 300

Query: 125 REKQQYMKELRAYQQSEAYKMCTEKIQEK 153
             K++Y+K L AY+ S   K   ++ + K
Sbjct: 301 AAKKEYLKALAAYRASLVSKSSPDQGETK 329


>gi|149408141 TOX high mobility group box family member 2 isoform c
           [Homo sapiens]
          Length = 464

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 5   PKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGKKRKK 64
           P  PG+ +A     +  Q     V  K    + P A        +P KK   PK KK+K 
Sbjct: 149 PSPPGSKSATPSPSSSTQEEESEVHFKISGEKRPSA--------DPGKKAKNPKKKKKKD 200

Query: 65  ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
             PN P+ PV+ Y  F  + +  I+ ++P   F +++K++ + W  L   +KQ Y  + E
Sbjct: 201 --PNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTE 258

Query: 125 REKQQYMKELRAYQQSEAYKMCTEKIQEK 153
             K++Y+K L AY+ S   K   ++ + K
Sbjct: 259 AAKKEYLKALAAYRASLVSKSSPDQGETK 287


>gi|14249636 TOX high mobility group box family member 2 isoform c
           [Homo sapiens]
          Length = 464

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 5   PKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGKKRKK 64
           P  PG+ +A     +  Q     V  K    + P A        +P KK   PK KK+K 
Sbjct: 149 PSPPGSKSATPSPSSSTQEEESEVHFKISGEKRPSA--------DPGKKAKNPKKKKKKD 200

Query: 65  ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
             PN P+ PV+ Y  F  + +  I+ ++P   F +++K++ + W  L   +KQ Y  + E
Sbjct: 201 --PNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTE 258

Query: 125 REKQQYMKELRAYQQSEAYKMCTEKIQEK 153
             K++Y+K L AY+ S   K   ++ + K
Sbjct: 259 AAKKEYLKALAAYRASLVSKSSPDQGETK 287


>gi|194688135 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 5/132 (3%)

Query: 31  KQERGEGPRAGEKGSHEEEPVKKRGWPKG-KKRKKILPNGPKAPVTGYVRFLNERREQIR 89
           ++ + E     +K  ++ E +K    PKG KK KK  PN PK P + +  F +E R +I+
Sbjct: 56  EKSKFEDMAKSDKARYDRE-MKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK 114

Query: 90  TRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQ---QSEAYKMC 146
           + HP L   +  K LG  WS+    +KQ Y  +A + K++Y K++ AY+   +SEA K  
Sbjct: 115 SEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG 174

Query: 147 TEKIQEKKIKKE 158
             +    K K E
Sbjct: 175 PGRPTGSKKKNE 186



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
           PN P+  ++ Y  F+   RE+ + +HPD  + F E +K     W  +   EK ++ D A+
Sbjct: 6   PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65

Query: 125 REKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSS 162
            +K +Y +E++ Y   +          +KK KK+D ++
Sbjct: 66  SDKARYDREMKNYVPPKG---------DKKGKKKDPNA 94


>gi|194688133 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 5/132 (3%)

Query: 31  KQERGEGPRAGEKGSHEEEPVKKRGWPKG-KKRKKILPNGPKAPVTGYVRFLNERREQIR 89
           ++ + E     +K  ++ E +K    PKG KK KK  PN PK P + +  F +E R +I+
Sbjct: 56  EKSKFEDMAKSDKARYDRE-MKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK 114

Query: 90  TRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQ---QSEAYKMC 146
           + HP L   +  K LG  WS+    +KQ Y  +A + K++Y K++ AY+   +SEA K  
Sbjct: 115 SEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG 174

Query: 147 TEKIQEKKIKKE 158
             +    K K E
Sbjct: 175 PGRPTGSKKKNE 186



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
           PN P+  ++ Y  F+   RE+ + +HPD  + F E +K     W  +   EK ++ D A+
Sbjct: 6   PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65

Query: 125 REKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSS 162
            +K +Y +E++ Y   +          +KK KK+D ++
Sbjct: 66  SDKARYDREMKNYVPPKG---------DKKGKKKDPNA 94


>gi|11321591 high-mobility group box 2 [Homo sapiens]
          Length = 209

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 5/132 (3%)

Query: 31  KQERGEGPRAGEKGSHEEEPVKKRGWPKG-KKRKKILPNGPKAPVTGYVRFLNERREQIR 89
           ++ + E     +K  ++ E +K    PKG KK KK  PN PK P + +  F +E R +I+
Sbjct: 56  EKSKFEDMAKSDKARYDRE-MKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK 114

Query: 90  TRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQ---QSEAYKMC 146
           + HP L   +  K LG  WS+    +KQ Y  +A + K++Y K++ AY+   +SEA K  
Sbjct: 115 SEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG 174

Query: 147 TEKIQEKKIKKE 158
             +    K K E
Sbjct: 175 PGRPTGSKKKNE 186



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPTEKQRYLDEAE 124
           PN P+  ++ Y  F+   RE+ + +HPD  + F E +K     W  +   EK ++ D A+
Sbjct: 6   PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65

Query: 125 REKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSS 162
            +K +Y +E++ Y   +          +KK KK+D ++
Sbjct: 66  SDKARYDREMKNYVPPKG---------DKKGKKKDPNA 94


>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
          Length = 621

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 49  EPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEW 108
           E  KK+  PK  KRKK  PN P+ PV+ Y  F  + +  I+ ++P+  F E++K++ + W
Sbjct: 204 EAGKKQKAPK--KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMW 261

Query: 109 SKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQ 151
             L   +KQ Y  + E  K++Y+K L AY+ ++  +   E ++
Sbjct: 262 DSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVE 304


>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin e1 [Homo sapiens]
          Length = 411

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 18/192 (9%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
           P  P  P+  Y+R+  +  +Q++  +PDL   EI K++G  W  L   EKQ YL+E E E
Sbjct: 63  PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122

Query: 127 KQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVP 186
           K +Y + ++AY  S AY          +   E+ S    + +    KG         + P
Sbjct: 123 KIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRM---EKGEPYMSIQPAEDP 179

Query: 187 IFTEEFLDQNKAREAELRRLRKM--------------NVAFEEQNAVLQRHTQSMSSARE 232
              ++         A  +R  ++              +V    +  VL+R  QS+   + 
Sbjct: 180 DDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQR 239

Query: 233 RLEQE-LALEER 243
           +LE E L +EER
Sbjct: 240 KLEAELLQIEER 251


>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 208

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 9/119 (7%)

Query: 48  EEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAE 107
           +  +K  G  KG K+K   PN PK P +G+  F +E R +I++ +P +   ++ K LG  
Sbjct: 72  DREMKDYGPAKGGKKKD--PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEM 129

Query: 108 WSKLQPTEKQRYLDEAEREKQQYMKEL-------RAYQQSEAYKMCTEKIQEKKIKKED 159
           W+ L  +EKQ Y+ +A + K++Y K++       + Y      K+  +K++E+  + E+
Sbjct: 130 WNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAKRPAKVARKKVEEEDEEDEE 188


>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 208

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 9/119 (7%)

Query: 48  EEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAE 107
           +  +K  G  KG K+K   PN PK P +G+  F +E R +I++ +P +   ++ K LG  
Sbjct: 72  DREMKDYGPAKGGKKKD--PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEM 129

Query: 108 WSKLQPTEKQRYLDEAEREKQQYMKEL-------RAYQQSEAYKMCTEKIQEKKIKKED 159
           W+ L  +EKQ Y+ +A + K++Y K++       + Y      K+  +K++E+  + E+
Sbjct: 130 WNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAKRPAKVARKKVEEEDEEDEE 188


>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 208

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 9/119 (7%)

Query: 48  EEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAE 107
           +  +K  G  KG K+K   PN PK P +G+  F +E R +I++ +P +   ++ K LG  
Sbjct: 72  DREMKDYGPAKGGKKKD--PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEM 129

Query: 108 WSKLQPTEKQRYLDEAEREKQQYMKEL-------RAYQQSEAYKMCTEKIQEKKIKKED 159
           W+ L  +EKQ Y+ +A + K++Y K++       + Y      K+  +K++E+  + E+
Sbjct: 130 WNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAKRPAKVARKKVEEEDEEDEE 188


>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 204

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 54  RGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQP 113
           +G  KG K+KK  P+ PK P +G+  F +E R +I++ +P +   ++ K LG  W+ L  
Sbjct: 73  KGPAKGGKKKKD-PSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLND 131

Query: 114 TEKQRYLDEAEREKQQYMKELRAYQQSEAY--KMCTEKIQEKKIKKEDSSSGLMNTLLN 170
           +EKQ Y+ +  + K++Y K++   +    +       K+  KK+++ED     M   +N
Sbjct: 132 SEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDEDEEEMRRRMN 190



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
           P  PK  ++ YV F+   RE+ + ++P + F E +K     W  +   EK ++ + A+ +
Sbjct: 6   PKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDEMAKTD 64

Query: 127 KQQYMKELR 135
           K    +E++
Sbjct: 65  KVHCDREMK 73


>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
           sapiens]
          Length = 204

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 54  RGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQP 113
           +G  KG K+KK  P+ PK P +G+  F +E R +I++ +P +   ++ K LG  W+ L  
Sbjct: 73  KGPAKGGKKKKD-PSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLND 131

Query: 114 TEKQRYLDEAEREKQQYMKELRAYQQSEAY--KMCTEKIQEKKIKKEDSSSGLMNTLLN 170
           +EKQ Y+ +  + K++Y K++   +    +       K+  KK+++ED     M   +N
Sbjct: 132 SEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDEDEEEMRRRMN 190



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
           P  PK  ++ YV F+   RE+ + ++P + F E +K     W  +   EK ++ + A+ +
Sbjct: 6   PKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDEMAKTD 64

Query: 127 KQQYMKELR 135
           K    +E++
Sbjct: 65  KVHCDREMK 73


>gi|239742753 PREDICTED: similar to high mobility group box 3
           isoform 2 [Homo sapiens]
          Length = 183

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 54  RGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQP 113
           +G  KG K+KK  P+ PK P +G+  F +E R +I++ +P +   ++ K LG  W+ L  
Sbjct: 55  KGPAKGGKKKKD-PSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLND 113

Query: 114 TEKQRYLDEAEREKQQYMKELRAYQQSEAY--KMCTEKIQEKKIKKEDSSSGLMNTLLN 170
           +EKQ Y+ +  + K++Y K++   +    +       K+  KK+++ED     M   +N
Sbjct: 114 SEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDEDEEEMRRRMN 172


>gi|113416897 PREDICTED: similar to high mobility group box 3
           isoform 1 [Homo sapiens]
          Length = 201

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 54  RGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQP 113
           +G  KG K+KK  P+ PK P +G+  F +E R +I++ +P +   ++ K LG  W+ L  
Sbjct: 73  KGPAKGGKKKKD-PSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLND 131

Query: 114 TEKQRYLDEAEREKQQYMKELRAYQQSEAY--KMCTEKIQEKKIKKEDSSSGLMNTLLN 170
           +EKQ Y+ +  + K++Y K++   +    +       K+  KK+++ED     M   +N
Sbjct: 132 SEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAKVAWKKVEEEDEDEEEMRRRMN 190



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 67  PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAERE 126
           P  PK  ++ YV F+   RE+ + ++P + F E +K     W  +   EK ++ + A+ +
Sbjct: 6   PKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDEMAKTD 64

Query: 127 KQQYMKELR 135
           K    +E++
Sbjct: 65  KVHCDREMK 73


>gi|115529449 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 58  KGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQ 117
           KGKK KK  P+ PK P+T Y RF  E+R +    HP++   ++TK+L  ++ +L   +K 
Sbjct: 101 KGKKLKKH-PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKM 159

Query: 118 RYLDEAEREKQQYMKELRAYQQ 139
           +Y+ + +REKQ++ + L  +++
Sbjct: 160 KYIQDFQREKQEFERNLARFRE 181



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 40  AGEKGSHEEEPVKKRGWP---KGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLP 96
           A ++  +E E  + R  P      K+ K      K P+ GY +F  E        H  LP
Sbjct: 498 AEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNH--LP 555

Query: 97  FPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQS 140
             E    +G+ W ++  ++K+ Y   AE +++QY   L  + +S
Sbjct: 556 LKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 599



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 70  PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRY 119
           PK PV+    F  E+R Q++   P+L   E+T++L   W+ L   +K +Y
Sbjct: 370 PKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKY 419



 Score = 37.0 bits (84), Expect = 0.023
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 18/200 (9%)

Query: 48  EEPVKKRGWPKGKKRKKILPNG--PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLG 105
           EE + K    K +++ K   +G   K P   Y  +  E    ++    D+P  E   +  
Sbjct: 237 EEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCS 292

Query: 106 AEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKI----KKEDSS 161
            +W  L   EK  Y  + +++K+ Y  EL  + +S   +     + E+K+    KK+ +S
Sbjct: 293 QQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATS 352

Query: 162 SGLMNTLLNGHKGG-DCDGFSTFDVPIFTEEFL-----DQNKAREAELRRL--RKMNVAF 213
                    G KGG +        + IF+EE       ++ +  E+EL RL  R  N   
Sbjct: 353 PASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 412

Query: 214 EEQNAVLQRHTQSMSSARER 233
           E++ A  +    ++ +  ER
Sbjct: 413 EKKKAKYKAREAALKAQSER 432


>gi|115529451 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 58  KGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQ 117
           KGKK KK  P+ PK P+T Y RF  E+R +    HP++   ++TK+L  ++ +L   +K 
Sbjct: 101 KGKKLKKH-PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKM 159

Query: 118 RYLDEAEREKQQYMKELRAYQQ 139
           +Y+ + +REKQ++ + L  +++
Sbjct: 160 KYIQDFQREKQEFERNLARFRE 181



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 40  AGEKGSHEEEPVKKRGWP---KGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLP 96
           A ++  +E E  + R  P      K+ K      K P+ GY +F  E        H  LP
Sbjct: 498 AEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNH--LP 555

Query: 97  FPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQS 140
             E    +G+ W ++  ++K+ Y   AE +++QY   L  + +S
Sbjct: 556 LKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 599



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 70  PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRY 119
           PK PV+    F  E+R Q++   P+L   E+T++L   W+ L   +K +Y
Sbjct: 370 PKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKY 419



 Score = 37.0 bits (84), Expect = 0.023
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 18/200 (9%)

Query: 48  EEPVKKRGWPKGKKRKKILPNG--PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLG 105
           EE + K    K +++ K   +G   K P   Y  +  E    ++    D+P  E   +  
Sbjct: 237 EEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCS 292

Query: 106 AEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKI----KKEDSS 161
            +W  L   EK  Y  + +++K+ Y  EL  + +S   +     + E+K+    KK+ +S
Sbjct: 293 QQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATS 352

Query: 162 SGLMNTLLNGHKGG-DCDGFSTFDVPIFTEEFL-----DQNKAREAELRRL--RKMNVAF 213
                    G KGG +        + IF+EE       ++ +  E+EL RL  R  N   
Sbjct: 353 PASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 412

Query: 214 EEQNAVLQRHTQSMSSARER 233
           E++ A  +    ++ +  ER
Sbjct: 413 EKKKAKYKAREAALKAQSER 432


>gi|7657671 upstream binding transcription factor, RNA polymerase I
           isoform a [Homo sapiens]
          Length = 764

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 58  KGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQ 117
           KGKK KK  P+ PK P+T Y RF  E+R +    HP++   ++TK+L  ++ +L   +K 
Sbjct: 101 KGKKLKKH-PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKM 159

Query: 118 RYLDEAEREKQQYMKELRAYQQ 139
           +Y+ + +REKQ++ + L  +++
Sbjct: 160 KYIQDFQREKQEFERNLARFRE 181



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 40  AGEKGSHEEEPVKKRGWP---KGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLP 96
           A ++  +E E  + R  P      K+ K      K P+ GY +F  E        H  LP
Sbjct: 535 AEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLSNGELNH--LP 592

Query: 97  FPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQS 140
             E    +G+ W ++  ++K+ Y   AE +++QY   L  + +S
Sbjct: 593 LKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 636



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 70  PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRY 119
           PK PV+    F  E+R Q++   P+L   E+T++L   W+ L   +K +Y
Sbjct: 407 PKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKY 456



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 62  RKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLD 121
           +K  +P  PK P   +  + +E++  ++ R PD    E+   LG +WS+L   ++ +++ 
Sbjct: 191 KKSDIPEKPKTPQQLW--YTHEKKVYLKVR-PDATTKEVKDSLGKQWSQLSDKKRLKWIH 247

Query: 122 EAEREKQQYMKELRAYQQ 139
           +A  ++++Y + +R Y Q
Sbjct: 248 KALEQRKEYEEIMRDYIQ 265



 Score = 37.0 bits (84), Expect = 0.023
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 18/200 (9%)

Query: 48  EEPVKKRGWPKGKKRKKILPNG--PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLG 105
           EE + K    K +++ K   +G   K P   Y  +  E    ++    D+P  E   +  
Sbjct: 274 EEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCS 329

Query: 106 AEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKI----KKEDSS 161
            +W  L   EK  Y  + +++K+ Y  EL  + +S   +     + E+K+    KK+ +S
Sbjct: 330 QQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATS 389

Query: 162 SGLMNTLLNGHKGG-DCDGFSTFDVPIFTEEFL-----DQNKAREAELRRL--RKMNVAF 213
                    G KGG +        + IF+EE       ++ +  E+EL RL  R  N   
Sbjct: 390 PASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 449

Query: 214 EEQNAVLQRHTQSMSSARER 233
           E++ A  +    ++ +  ER
Sbjct: 450 EKKKAKYKAREAALKAQSER 469


>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
          Length = 709

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 4/175 (2%)

Query: 33  ERGEGPRAGEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRH 92
           +R E  R   K +   +  K R  P   K+ K  PN PK P++ Y+ +LN  RE+I++ H
Sbjct: 511 DRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKD-PNAPKRPMSAYMLWLNASREKIKSDH 569

Query: 93  PDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQE 152
           P +   +++K  G  W  +   +K+ +  +AE  ++ Y K ++ Y+         +K ++
Sbjct: 570 PGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKK 629

Query: 153 K---KIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELR 204
           K   K+K E  S+    +          + F + +     E    +NK+++   R
Sbjct: 630 KKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRR 684


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,207,561
Number of Sequences: 37866
Number of extensions: 670943
Number of successful extensions: 5017
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 324
Number of HSP's that attempted gapping in prelim test: 4026
Number of HSP's gapped (non-prelim): 1193
length of query: 317
length of database: 18,247,518
effective HSP length: 102
effective length of query: 215
effective length of database: 14,385,186
effective search space: 3092814990
effective search space used: 3092814990
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.