Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 82734223
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|82734223 beta-defensin 124 [Homo sapiens]
(71 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|82734223 beta-defensin 124 [Homo sapiens] 157 1e-39
gi|116517226 beta-defensin 135 [Homo sapiens] 49 1e-06
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 41 2e-04
gi|58865339 defensin, beta 121 [Homo sapiens] 40 3e-04
gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 40 4e-04
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 40 5e-04
gi|46409558 beta-defensin 32 precursor [Homo sapiens] 38 0.001
gi|16905373 beta-defensin 118 [Homo sapiens] 38 0.002
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 36 0.006
gi|103485139 defensin, beta 104A precursor [Homo sapiens] 35 0.017
gi|103485137 defensin, beta 104B precursor [Homo sapiens] 35 0.017
gi|50344744 beta-defensin 108B [Homo sapiens] 34 0.028
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|83582798 beta-defensin 115 [Homo sapiens] 33 0.048
gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 33 0.063
gi|83582800 beta-defensin 116 [Homo sapiens] 33 0.063
gi|83582802 beta-defensin 128 [Homo sapiens] 33 0.063
gi|4506107 prolactin receptor [Homo sapiens] 31 0.24
gi|13624333 defensin, beta 126 preproprotein [Homo sapiens] 30 0.31
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 30 0.41
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 30 0.41
gi|17402931 sperm associated antigen 11B isoform C preproprotein... 29 0.91
gi|161019170 mucin 5AC [Homo sapiens] 28 1.2
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 28 1.2
gi|83582794 beta-defensin 110 [Homo sapiens] 28 1.6
gi|5730021 regulatory solute carrier protein, family 1, member 1... 28 2.0
gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 27 2.6
gi|239755481 PREDICTED: similar to Putative uncharacterized prot... 27 2.6
>gi|82734223 beta-defensin 124 [Homo sapiens]
Length = 71
Score = 157 bits (398), Expect = 1e-39
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL 60
MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL
Sbjct: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL 60
Query: 61 KPPPVPKHEYE 71
KPPPVPKHEYE
Sbjct: 61 KPPPVPKHEYE 71
>gi|116517226 beta-defensin 135 [Homo sapiens]
Length = 77
Score = 48.5 bits (114), Expect = 1e-06
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 4 LLLFLVALLVLGHVPSGRSE--------FKRCWKGQGACQTYCTRQETYMHLCPDASLCC 55
+LL LV L +L +VP GRS F CW+ QG C+ C + E Y LC LCC
Sbjct: 6 VLLALVVLNLLFYVPPGRSGPNVYIQKIFASCWRLQGTCRPKCLKNEQYRILCDTIHLCC 65
Query: 56 LS 57
++
Sbjct: 66 VN 67
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 41.2 bits (95), Expect = 2e-04
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL 60
M LLL L LL+L + G ++ RCW G C+ C+++E C + +CC +
Sbjct: 1 MKLLLLTLTVLLLLSQLTPGGTQ--RCWNLYGKCRYRCSKKERVYVYCINNKMCC----V 54
Query: 61 KPPPVPKHEY 70
KP PK +
Sbjct: 55 KPKYQPKERW 64
>gi|58865339 defensin, beta 121 [Homo sapiens]
Length = 76
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56
M LLL L L+L V + +CW G C+T C E Y LC + CC+
Sbjct: 1 MKLLLLLLTVTLLLAQV----TPVMKCWGKSGRCRTTCKESEVYYILCKTEAKCCV 52
>gi|21040279 defensin, beta 127 preproprotein [Homo sapiens]
Length = 99
Score = 40.0 bits (92), Expect = 4e-04
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 6 LFLVALLVLGHVPSGRSEFKRCWKG--QGACQTYCTRQETYMHLCPDASLCCLSY----- 58
LF++ ++L P+ + K+CW QG C+ C E LC + CCL+
Sbjct: 3 LFMIIAILLFQKPTVTEQLKKCWNNYVQGHCRKICRVNEVPEALCENGRYCCLNIKELEA 62
Query: 59 --ALKPPPVPK 67
+ PP PK
Sbjct: 63 CKKITKPPRPK 73
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 39.7 bits (91), Expect = 5e-04
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQ-GACQTYCTRQETYMHLCPDASLCCLSYA 59
M L+L + +L V G E ++CWK G C+ C E Y+ LC + CC+S
Sbjct: 1 MNILMLTFIICGLLTRVTKGSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCCIS-- 58
Query: 60 LKPPPVPKHEY 70
+ HEY
Sbjct: 59 -----IISHEY 64
>gi|46409558 beta-defensin 32 precursor [Homo sapiens]
Length = 95
Score = 38.1 bits (87), Expect = 0.001
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQ-GACQTYCTRQETYMHLCPDASLCCLSYA 59
M LLL L AL L V + +C G C+T C ET + +C + CC+SY+
Sbjct: 1 MKFLLLVLAALGFLTQVIPASAGGSKCVSNTPGYCRTCCHWGETALFMCNASRKCCISYS 60
Query: 60 LKPPP 64
P P
Sbjct: 61 FLPKP 65
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56
M LLL L L++L V S K+CW G C+ C E C + CC+
Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSGEKKCWNRSGHCRKQCKDGEAVKDTCKNLRACCI 56
>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
Length = 84
Score = 36.2 bits (82), Expect = 0.006
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MTQLLLFLVALLVLGH-VPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56
M L LFL LL + V SG+ RC G C+ C + E C + CCL
Sbjct: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCL 57
>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
Length = 72
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 4 LLLFLVALLVLGHVPSGRSEFKR---CWKGQGACQTYCTRQETYMHLCPDASLCCL 56
+LL ++LL+ +P RSEF+ C G C+ C QE + CP+ CCL
Sbjct: 5 VLLLAISLLLYQDLPV-RSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
Length = 72
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 4 LLLFLVALLVLGHVPSGRSEFKR---CWKGQGACQTYCTRQETYMHLCPDASLCCL 56
+LL ++LL+ +P RSEF+ C G C+ C QE + CP+ CCL
Sbjct: 5 VLLLAISLLLYQDLPV-RSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62
+LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P
Sbjct: 5 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLGHQP 63
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62
+LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P
Sbjct: 15 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQP 73
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62
+LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P
Sbjct: 15 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQP 73
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62
+LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P
Sbjct: 5 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQP 63
>gi|83582798 beta-defensin 115 [Homo sapiens]
Length = 88
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 5 LLFLVALLVLGHV-PSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56
+L LV L+VL P G +RC+ G G C+ C E C + +CC+
Sbjct: 17 VLALVVLVVLAQTAPDGW--IRRCYYGTGRCRKSCKEIERKKEKCGEKHICCV 67
>gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
sapiens]
Length = 111
Score = 32.7 bits (73), Expect = 0.063
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 21 RSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62
R +FK C + G+CQ +C E ++ C ++ CCL +P
Sbjct: 59 RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQP 101
>gi|83582800 beta-defensin 116 [Homo sapiens]
Length = 102
Score = 32.7 bits (73), Expect = 0.063
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 1 MTQLLLFLVALLVLG-----HVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCC 55
MT +L ++A G H R + C QG C+ C E CP+ CC
Sbjct: 9 MTIAILMILAQKTPGGLFRSHNGKSREPWNPCELYQGMCRNACREYEIQYLTCPNDQKCC 68
Query: 56 LSYALK 61
L ++K
Sbjct: 69 LKLSVK 74
>gi|83582802 beta-defensin 128 [Homo sapiens]
Length = 93
Score = 32.7 bits (73), Expect = 0.063
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 6 LFLVALLVLGHVPSGRSEFKRCW-KGQGACQTYCTRQETYMHLCPDASLCC 55
LFLV +++L V + + K+C+ K G C+ C E Y C LCC
Sbjct: 3 LFLVLIILLFEVLTDGARLKKCFNKVTGYCRKKCKVGERYEIGCLSGKLCC 53
>gi|4506107 prolactin receptor [Homo sapiens]
Length = 622
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 18/65 (27%)
Query: 4 LLLFLVALLVLGHVPSGRSE-FK---------RCWKGQGA--------CQTYCTRQETYM 45
LLLFL L+ G +P G+ E FK CW G TY ET M
Sbjct: 13 LLLFLNTCLLNGQLPPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLM 72
Query: 46 HLCPD 50
H CPD
Sbjct: 73 HECPD 77
>gi|13624333 defensin, beta 126 preproprotein [Homo sapiens]
Length = 111
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMH----LCPDASLCCL 56
M LL L ++L + SG K+C G C+ C +E ++ +C CC+
Sbjct: 1 MKSLLFTLAVFMLLAQLVSGNWYVKKCLNDVGICKKKCKPEEMHVKNGWAMCGKQRDCCV 60
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 7 FLVALLVLGHVPSGRSEF--KRCWKGQGACQTYCTRQETYMHLCPDASLCC 55
FL VL + ++ F ++C K +G C+ C + E + LC + CC
Sbjct: 4 FLFLFAVLFFLTPAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 7 FLVALLVLGHVPSGRSEF--KRCWKGQGACQTYCTRQETYMHLCPDASLCC 55
FL VL + ++ F ++C K +G C+ C + E + LC + CC
Sbjct: 4 FLFLFAVLFFLTPAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54
>gi|17402931 sperm associated antigen 11B isoform C preproprotein
[Homo sapiens]
Length = 113
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 27 CWKGQGACQTYCTRQETYMHLC-PDASLCCL 56
C + +G CQ YC ET + C CCL
Sbjct: 82 CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 32 GACQTYCTRQETYMHLCPDASLC 54
G C+ +CT Y C DA LC
Sbjct: 1813 GDCECFCTAVAAYAQACHDAGLC 1835
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 32 GACQTYCTRQETYMHLCPDASLC 54
G C+ +CT Y C DA LC
Sbjct: 1123 GDCECFCTAVAAYAQACHDAGLC 1145
>gi|83582794 beta-defensin 110 [Homo sapiens]
Length = 62
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 4 LLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQE-TYMHLCPDASLCCL 56
+L F V +L + F+RC K +G C+T+C E Y + S CC+
Sbjct: 9 ILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
>gi|5730021 regulatory solute carrier protein, family 1, member 1
[Homo sapiens]
Length = 617
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 30 GQGACQTYCTRQETYMHLCPDASLCCLSYALKPP 63
GQG + R ET ++CPDAS L Y +PP
Sbjct: 525 GQGIQNSVTDRPETRENVCPDASRPLLEY--EPP 556
>gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 25 KRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56
K CW +G C+ C E C + CC+
Sbjct: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCI 47
>gi|239755481 PREDICTED: similar to Putative uncharacterized protein
ENSP00000334305 [Homo sapiens]
Length = 771
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 30 GQGACQTYCTRQETYMHLCPDASLCCLSYALKPPPV 65
G AC C R+ H CPD SL S + PPV
Sbjct: 405 GTQACFEVCARRLKLAHFCPDTSL--WSCGGQSPPV 438
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,555,786
Number of Sequences: 37866
Number of extensions: 141252
Number of successful extensions: 490
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 45
length of query: 71
length of database: 18,247,518
effective HSP length: 44
effective length of query: 27
effective length of database: 16,581,414
effective search space: 447698178
effective search space used: 447698178
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.