BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|82734223 beta-defensin 124 [Homo sapiens] (71 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|82734223 beta-defensin 124 [Homo sapiens] 157 1e-39 gi|116517226 beta-defensin 135 [Homo sapiens] 49 1e-06 gi|23503331 defensin, beta 123 precursor [Homo sapiens] 41 2e-04 gi|58865339 defensin, beta 121 [Homo sapiens] 40 3e-04 gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 40 4e-04 gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 40 5e-04 gi|46409558 beta-defensin 32 precursor [Homo sapiens] 38 0.001 gi|16905373 beta-defensin 118 [Homo sapiens] 38 0.002 gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 36 0.006 gi|103485139 defensin, beta 104A precursor [Homo sapiens] 35 0.017 gi|103485137 defensin, beta 104B precursor [Homo sapiens] 35 0.017 gi|50344744 beta-defensin 108B [Homo sapiens] 34 0.028 gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037 gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037 gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037 gi|83582798 beta-defensin 115 [Homo sapiens] 33 0.048 gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 33 0.063 gi|83582800 beta-defensin 116 [Homo sapiens] 33 0.063 gi|83582802 beta-defensin 128 [Homo sapiens] 33 0.063 gi|4506107 prolactin receptor [Homo sapiens] 31 0.24 gi|13624333 defensin, beta 126 preproprotein [Homo sapiens] 30 0.31 gi|22748611 defensin, beta 106A precursor [Homo sapiens] 30 0.41 gi|103485143 defensin, beta 106B precursor [Homo sapiens] 30 0.41 gi|17402931 sperm associated antigen 11B isoform C preproprotein... 29 0.91 gi|161019170 mucin 5AC [Homo sapiens] 28 1.2 gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 28 1.2 gi|83582794 beta-defensin 110 [Homo sapiens] 28 1.6 gi|5730021 regulatory solute carrier protein, family 1, member 1... 28 2.0 gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 27 2.6 gi|239755481 PREDICTED: similar to Putative uncharacterized prot... 27 2.6 >gi|82734223 beta-defensin 124 [Homo sapiens] Length = 71 Score = 157 bits (398), Expect = 1e-39 Identities = 71/71 (100%), Positives = 71/71 (100%) Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL 60 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL Sbjct: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL 60 Query: 61 KPPPVPKHEYE 71 KPPPVPKHEYE Sbjct: 61 KPPPVPKHEYE 71 >gi|116517226 beta-defensin 135 [Homo sapiens] Length = 77 Score = 48.5 bits (114), Expect = 1e-06 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 8/62 (12%) Query: 4 LLLFLVALLVLGHVPSGRSE--------FKRCWKGQGACQTYCTRQETYMHLCPDASLCC 55 +LL LV L +L +VP GRS F CW+ QG C+ C + E Y LC LCC Sbjct: 6 VLLALVVLNLLFYVPPGRSGPNVYIQKIFASCWRLQGTCRPKCLKNEQYRILCDTIHLCC 65 Query: 56 LS 57 ++ Sbjct: 66 VN 67 >gi|23503331 defensin, beta 123 precursor [Homo sapiens] Length = 67 Score = 41.2 bits (95), Expect = 2e-04 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCLSYAL 60 M LLL L LL+L + G ++ RCW G C+ C+++E C + +CC + Sbjct: 1 MKLLLLTLTVLLLLSQLTPGGTQ--RCWNLYGKCRYRCSKKERVYVYCINNKMCC----V 54 Query: 61 KPPPVPKHEY 70 KP PK + Sbjct: 55 KPKYQPKERW 64 >gi|58865339 defensin, beta 121 [Homo sapiens] Length = 76 Score = 40.4 bits (93), Expect = 3e-04 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56 M LLL L L+L V + +CW G C+T C E Y LC + CC+ Sbjct: 1 MKLLLLLLTVTLLLAQV----TPVMKCWGKSGRCRTTCKESEVYYILCKTEAKCCV 52 >gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] Length = 99 Score = 40.0 bits (92), Expect = 4e-04 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%) Query: 6 LFLVALLVLGHVPSGRSEFKRCWKG--QGACQTYCTRQETYMHLCPDASLCCLSY----- 58 LF++ ++L P+ + K+CW QG C+ C E LC + CCL+ Sbjct: 3 LFMIIAILLFQKPTVTEQLKKCWNNYVQGHCRKICRVNEVPEALCENGRYCCLNIKELEA 62 Query: 59 --ALKPPPVPK 67 + PP PK Sbjct: 63 CKKITKPPRPK 73 >gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] Length = 156 Score = 39.7 bits (91), Expect = 5e-04 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQ-GACQTYCTRQETYMHLCPDASLCCLSYA 59 M L+L + +L V G E ++CWK G C+ C E Y+ LC + CC+S Sbjct: 1 MNILMLTFIICGLLTRVTKGSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCCIS-- 58 Query: 60 LKPPPVPKHEY 70 + HEY Sbjct: 59 -----IISHEY 64 >gi|46409558 beta-defensin 32 precursor [Homo sapiens] Length = 95 Score = 38.1 bits (87), Expect = 0.001 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQ-GACQTYCTRQETYMHLCPDASLCCLSYA 59 M LLL L AL L V + +C G C+T C ET + +C + CC+SY+ Sbjct: 1 MKFLLLVLAALGFLTQVIPASAGGSKCVSNTPGYCRTCCHWGETALFMCNASRKCCISYS 60 Query: 60 LKPPP 64 P P Sbjct: 61 FLPKP 65 >gi|16905373 beta-defensin 118 [Homo sapiens] Length = 123 Score = 37.7 bits (86), Expect = 0.002 Identities = 19/56 (33%), Positives = 25/56 (44%) Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56 M LLL L L++L V S K+CW G C+ C E C + CC+ Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSGEKKCWNRSGHCRKQCKDGEAVKDTCKNLRACCI 56 >gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] Length = 84 Score = 36.2 bits (82), Expect = 0.006 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 1 MTQLLLFLVALLVLGH-VPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56 M L LFL LL + V SG+ RC G C+ C + E C + CCL Sbjct: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCL 57 >gi|103485139 defensin, beta 104A precursor [Homo sapiens] Length = 72 Score = 34.7 bits (78), Expect = 0.017 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 4 LLLFLVALLVLGHVPSGRSEFKR---CWKGQGACQTYCTRQETYMHLCPDASLCCL 56 +LL ++LL+ +P RSEF+ C G C+ C QE + CP+ CCL Sbjct: 5 VLLLAISLLLYQDLPV-RSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59 >gi|103485137 defensin, beta 104B precursor [Homo sapiens] Length = 72 Score = 34.7 bits (78), Expect = 0.017 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 4 LLLFLVALLVLGHVPSGRSEFKR---CWKGQGACQTYCTRQETYMHLCPDASLCCL 56 +LL ++LL+ +P RSEF+ C G C+ C QE + CP+ CCL Sbjct: 5 VLLLAISLLLYQDLPV-RSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59 >gi|50344744 beta-defensin 108B [Homo sapiens] Length = 73 Score = 33.9 bits (76), Expect = 0.028 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62 +LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P Sbjct: 5 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLGHQP 63 >gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] Length = 83 Score = 33.5 bits (75), Expect = 0.037 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62 +LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P Sbjct: 15 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQP 73 >gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] Length = 83 Score = 33.5 bits (75), Expect = 0.037 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62 +LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P Sbjct: 15 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQP 73 >gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] Length = 73 Score = 33.5 bits (75), Expect = 0.037 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62 +LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P Sbjct: 5 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQP 63 >gi|83582798 beta-defensin 115 [Homo sapiens] Length = 88 Score = 33.1 bits (74), Expect = 0.048 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Query: 5 LLFLVALLVLGHV-PSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56 +L LV L+VL P G +RC+ G G C+ C E C + +CC+ Sbjct: 17 VLALVVLVVLAQTAPDGW--IRRCYYGTGRCRKSCKEIERKKEKCGEKHICCV 67 >gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo sapiens] Length = 111 Score = 32.7 bits (73), Expect = 0.063 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 21 RSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62 R +FK C + G+CQ +C E ++ C ++ CCL +P Sbjct: 59 RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQP 101 >gi|83582800 beta-defensin 116 [Homo sapiens] Length = 102 Score = 32.7 bits (73), Expect = 0.063 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 1 MTQLLLFLVALLVLG-----HVPSGRSEFKRCWKGQGACQTYCTRQETYMHLCPDASLCC 55 MT +L ++A G H R + C QG C+ C E CP+ CC Sbjct: 9 MTIAILMILAQKTPGGLFRSHNGKSREPWNPCELYQGMCRNACREYEIQYLTCPNDQKCC 68 Query: 56 LSYALK 61 L ++K Sbjct: 69 LKLSVK 74 >gi|83582802 beta-defensin 128 [Homo sapiens] Length = 93 Score = 32.7 bits (73), Expect = 0.063 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 6 LFLVALLVLGHVPSGRSEFKRCW-KGQGACQTYCTRQETYMHLCPDASLCC 55 LFLV +++L V + + K+C+ K G C+ C E Y C LCC Sbjct: 3 LFLVLIILLFEVLTDGARLKKCFNKVTGYCRKKCKVGERYEIGCLSGKLCC 53 >gi|4506107 prolactin receptor [Homo sapiens] Length = 622 Score = 30.8 bits (68), Expect = 0.24 Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 18/65 (27%) Query: 4 LLLFLVALLVLGHVPSGRSE-FK---------RCWKGQGA--------CQTYCTRQETYM 45 LLLFL L+ G +P G+ E FK CW G TY ET M Sbjct: 13 LLLFLNTCLLNGQLPPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLM 72 Query: 46 HLCPD 50 H CPD Sbjct: 73 HECPD 77 >gi|13624333 defensin, beta 126 preproprotein [Homo sapiens] Length = 111 Score = 30.4 bits (67), Expect = 0.31 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 1 MTQLLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQETYMH----LCPDASLCCL 56 M LL L ++L + SG K+C G C+ C +E ++ +C CC+ Sbjct: 1 MKSLLFTLAVFMLLAQLVSGNWYVKKCLNDVGICKKKCKPEEMHVKNGWAMCGKQRDCCV 60 >gi|22748611 defensin, beta 106A precursor [Homo sapiens] Length = 65 Score = 30.0 bits (66), Expect = 0.41 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 7 FLVALLVLGHVPSGRSEF--KRCWKGQGACQTYCTRQETYMHLCPDASLCC 55 FL VL + ++ F ++C K +G C+ C + E + LC + CC Sbjct: 4 FLFLFAVLFFLTPAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54 >gi|103485143 defensin, beta 106B precursor [Homo sapiens] Length = 65 Score = 30.0 bits (66), Expect = 0.41 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 7 FLVALLVLGHVPSGRSEF--KRCWKGQGACQTYCTRQETYMHLCPDASLCC 55 FL VL + ++ F ++C K +G C+ C + E + LC + CC Sbjct: 4 FLFLFAVLFFLTPAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54 >gi|17402931 sperm associated antigen 11B isoform C preproprotein [Homo sapiens] Length = 113 Score = 28.9 bits (63), Expect = 0.91 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Query: 27 CWKGQGACQTYCTRQETYMHLC-PDASLCCL 56 C + +G CQ YC ET + C CCL Sbjct: 82 CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112 >gi|161019170 mucin 5AC [Homo sapiens] Length = 6207 Score = 28.5 bits (62), Expect = 1.2 Identities = 10/23 (43%), Positives = 12/23 (52%) Query: 32 GACQTYCTRQETYMHLCPDASLC 54 G C+ +CT Y C DA LC Sbjct: 1813 GDCECFCTAVAAYAQACHDAGLC 1835 >gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] Length = 5765 Score = 28.5 bits (62), Expect = 1.2 Identities = 10/23 (43%), Positives = 12/23 (52%) Query: 32 GACQTYCTRQETYMHLCPDASLC 54 G C+ +CT Y C DA LC Sbjct: 1123 GDCECFCTAVAAYAQACHDAGLC 1145 >gi|83582794 beta-defensin 110 [Homo sapiens] Length = 62 Score = 28.1 bits (61), Expect = 1.6 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 4 LLLFLVALLVLGHVPSGRSEFKRCWKGQGACQTYCTRQE-TYMHLCPDASLCCL 56 +L F V +L + F+RC K +G C+T+C E Y + S CC+ Sbjct: 9 ILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62 >gi|5730021 regulatory solute carrier protein, family 1, member 1 [Homo sapiens] Length = 617 Score = 27.7 bits (60), Expect = 2.0 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 30 GQGACQTYCTRQETYMHLCPDASLCCLSYALKPP 63 GQG + R ET ++CPDAS L Y +PP Sbjct: 525 GQGIQNSVTDRPETRENVCPDASRPLLEY--EPP 556 >gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] Length = 53 Score = 27.3 bits (59), Expect = 2.6 Identities = 10/32 (31%), Positives = 14/32 (43%) Query: 25 KRCWKGQGACQTYCTRQETYMHLCPDASLCCL 56 K CW +G C+ C E C + CC+ Sbjct: 16 KSCWIIKGHCRKNCKPGEQVKKPCKNGDYCCI 47 >gi|239755481 PREDICTED: similar to Putative uncharacterized protein ENSP00000334305 [Homo sapiens] Length = 771 Score = 27.3 bits (59), Expect = 2.6 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Query: 30 GQGACQTYCTRQETYMHLCPDASLCCLSYALKPPPV 65 G AC C R+ H CPD SL S + PPV Sbjct: 405 GTQACFEVCARRLKLAHFCPDTSL--WSCGGQSPPV 438 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.326 0.139 0.478 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,555,786 Number of Sequences: 37866 Number of extensions: 141252 Number of successful extensions: 490 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 452 Number of HSP's gapped (non-prelim): 45 length of query: 71 length of database: 18,247,518 effective HSP length: 44 effective length of query: 27 effective length of database: 16,581,414 effective search space: 447698178 effective search space used: 447698178 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.