Guide to the Human Genome
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Name: GTPBP1 Sequence: fasta or formatted (669aa) NCBI GI: 82546879
Description:

GTP binding protein 1

Referenced in:

Additional Guanine Nucleotide-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         46           6
 C cysteine            1.6         11           1
 D aspartate           5.1         34           2
 E glutamate           6.1         41           3
 F phenylalanine       3.0         20           1
 G glycine             9.4         63           2
 H histidine           2.2         15           2
 I isoleucine          4.5         30           1
 K lysine              6.0         40           2
 L leucine             9.1         61           3
 M methionine          3.1         21           1
 N asparagine          3.1         21           2
 P proline             5.7         38           3
 Q glutamine           3.7         25           2
 R arginine            6.1         41           3
 S serine              8.5         57           2
 T threonine           6.3         42           2
 V valine              7.5         50           3
 W tryptophan          0.4          3           1
 Y tyrosine            1.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GTP binding protein 1 
GTPBP2                0.368   GTP binding protein 2 
TUFM                  0.051   Tu translation elongation factor, mitochondrial prec...
HBS1L                 0.044   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.044   Hsp70 subfamily B suppressor 1-like protein isoform 1...
EEF1A2                0.043   eukaryotic translation elongation factor 1 alpha 2 [H...
EEF1A1                0.041   eukaryotic translation elongation factor 1 alpha 1 [H...
GSPT1                 0.038   G1 to S phase transition 1 isoform 3 
GSPT1                 0.038   G1 to S phase transition 1 isoform 2 
GSPT1                 0.038   G1 to S phase transition 1 isoform 1 
GSPT2                 0.033   peptide chain release factor 3 
LOC100293909          0.031   PREDICTED: similar to eukaryotic translation elonga...
EEFSEC                0.026   eukaryotic elongation factor, selenocysteine-tRNA-sp...
EIF5B                 0.019   eukaryotic translation initiation factor 5B 
SNIP                  0.011   SNAP25-interacting protein 
SFPQ                  0.009   splicing factor proline/glutamine rich (polypyrimidin...
LOC100288426          0.008   PREDICTED: hypothetical protein XP_002343430 
LOC100132369          0.008   PREDICTED: hypothetical protein 
LOC100132369          0.008   PREDICTED: hypothetical protein 
LOC100132369          0.008   PREDICTED: hypothetical protein 
MAP4                  0.008   microtubule-associated protein 4 isoform 5 
MAP4                  0.008   microtubule-associated protein 4 isoform 2 
MAP4                  0.008   microtubule-associated protein 4 isoform 1 
CCDC88B               0.008   coiled-coil domain containing 88 
KCNQ1                 0.007   potassium voltage-gated channel, KQT-like subfamily,...
KDM6B                 0.007   lysine (K)-specific demethylase 6B 
PAWR                  0.007   PRKC, apoptosis, WT1, regulator 
SLC38A10              0.007   solute carrier family 38, member 10 isoform b 
LOC100292454          0.006   PREDICTED: similar to hCG2019076 
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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