Guide to the Human Genome
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Name: LOC100132369 Sequence: fasta or formatted (430aa) NCBI GI: 169205149
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {430aa} PREDICTED: hypothetical protein
alt mRNA {430aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         63           4
 C cysteine            2.1          9           2
 D aspartate           3.3         14           2
 E glutamate           5.6         24           2
 F phenylalanine       0.7          3           1
 G glycine            12.8         55           3
 H histidine           2.1          9           1
 I isoleucine          1.2          5           1
 K lysine              1.9          8           2
 L leucine             9.1         39           2
 M methionine          0.9          4           1
 N asparagine          0.5          2           1
 P proline             8.6         37           3
 Q glutamine           1.9          8           2
 R arginine           12.6         54           3
 S serine             10.5         45           4
 T threonine           4.4         19           1
 V valine              4.9         21           5
 W tryptophan          1.9          8           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132369          1.000   PREDICTED: hypothetical protein 
LOC100132369          1.000   PREDICTED: hypothetical protein 
LOC100292370          0.032   PREDICTED: hypothetical protein 
CDC2L5                0.027   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.027   cell division cycle 2-like 5 isoform 2 
LOC100293596          0.026   PREDICTED: similar to mucin 
LOC100291624          0.026   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.026   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.026   PREDICTED: hypothetical protein XP_002342583 
LOC100292328          0.025   PREDICTED: hypothetical protein 
LOC100287025          0.025   PREDICTED: hypothetical protein 
LOC100287025          0.025   PREDICTED: hypothetical protein XP_002344222 
SFRS16                0.024   splicing factor, arginine/serine-rich 16 
LOC100288496          0.023   PREDICTED: hypothetical protein XP_002342747 
FLJ37078              0.023   hypothetical protein LOC222183 
LOC100127891          0.021   PREDICTED: hypothetical protein 
COL11A1               0.021   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.021   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.021   alpha 1 type XI collagen isoform A preproprotein [Ho...
NKX1-1                0.021   PREDICTED: NK1 homeobox 1 
COL7A1                0.021   alpha 1 type VII collagen precursor 
LOC100293129          0.020   PREDICTED: hypothetical protein 
COL1A2                0.020   alpha 2 type I collagen 
COL23A1               0.020   collagen, type XXIII, alpha 1 
GPATCH8               0.020   G patch domain containing 8 
LOC100291596          0.020   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.020   PREDICTED: hypothetical protein 
LOC100288068          0.020   PREDICTED: hypothetical protein XP_002343259 
COL11A2               0.020   collagen, type XI, alpha 2 isoform 2 preproprotein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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