Guide to the Human Genome
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Name: EEF1A1 Sequence: fasta or formatted (462aa) NCBI GI: 4503471
Description:

eukaryotic translation elongation factor 1 alpha 1

Referenced in:

Inositol Pathways
Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         39           2
 C cysteine            1.3          6           1
 D aspartate           5.6         26           1
 E glutamate           5.8         27           2
 F phenylalanine       3.0         14           1
 G glycine             9.5         44           2
 H histidine           2.2         10           2
 I isoleucine          6.5         30           2
 K lysine             10.2         47           2
 L leucine             5.6         26           2
 M methionine          2.6         12           1
 N asparagine          3.5         16           1
 P proline             5.4         25           2
 Q glutamine           2.2         10           1
 R arginine            3.7         17           2
 S serine              5.0         23           1
 T threonine           6.3         29           3
 V valine              9.5         44           2
 W tryptophan          1.1          5           1
 Y tyrosine            2.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation elongation factor 1 alpha 1 [H... 
EEF1A2                0.933   eukaryotic translation elongation factor 1 alpha 2 [H...
LOC100293909          0.821   PREDICTED: similar to eukaryotic translation elonga...
HBS1L                 0.327   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.327   Hsp70 subfamily B suppressor 1-like protein isoform 1...
GSPT1                 0.317   G1 to S phase transition 1 isoform 3 
GSPT1                 0.317   G1 to S phase transition 1 isoform 2 
GSPT1                 0.317   G1 to S phase transition 1 isoform 1 
GSPT2                 0.310   peptide chain release factor 3 
TUFM                  0.158   Tu translation elongation factor, mitochondrial prec...
LOC729856             0.142   PREDICTED: similar to hCG1981735 
LOC729856             0.142   PREDICTED: similar to hCG1981735 
LOC729856             0.142   PREDICTED: similar to hCG1981735 
LOC643563             0.110   PREDICTED: similar to EEF1A1 protein 
LOC643563             0.110   PREDICTED: similar to EEF1A1 protein 
LOC643563             0.110   PREDICTED: similar to EEF1A1 protein 
EEFSEC                0.064   eukaryotic elongation factor, selenocysteine-tRNA-sp...
GTPBP1                0.060   GTP binding protein 1 
GTPBP2                0.045   GTP binding protein 2 
GUF1                  0.044   GUF1 GTPase homolog 
GFM2                  0.040   mitochondrial elongation factor G2 isoform 2 
GFM2                  0.040   mitochondrial elongation factor G2 isoform 3 
GFM2                  0.040   mitochondrial elongation factor G2 isoform 1 
GFM1                  0.035   G elongation factor, mitochondrial 1 
EEF2                  0.032   eukaryotic translation elongation factor 2 
EFTUD1                0.026   elongation factor Tu GTP binding domain containing 1...
LOC727963             0.025   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.025   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.025   PREDICTED: similar to elongation factor Tu GTP bind...
MTIF2                 0.024   mitochondrial translational initiation factor 2 prec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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