Guide to the Human Genome
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Name: LOC100288426 Sequence: fasta or formatted (230aa) NCBI GI: 239745342
Description:

PREDICTED: hypothetical protein XP_002343430

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         26           3
 C cysteine            3.0          7           1
 D aspartate           2.6          6           1
 E glutamate           3.5          8           1
 F phenylalanine       5.7         13           2
 G glycine            11.3         26           5
 H histidine           1.3          3           1
 I isoleucine          0.4          1           1
 K lysine              3.0          7           1
 L leucine             8.7         20           3
 M methionine          1.3          3           1
 N asparagine          1.7          4           1
 P proline            13.0         30           3
 Q glutamine           1.7          4           1
 R arginine           15.2         35           3
 S serine              6.5         15           1
 T threonine           2.6          6           1
 V valine              3.9          9           1
 W tryptophan          3.0          7           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343430 
LOC100289721          0.043   PREDICTED: hypothetical protein XP_002347280 
VASP                  0.041   vasodilator-stimulated phosphoprotein 
COL1A2                0.039   alpha 2 type I collagen 
SNAPC4                0.036   small nuclear RNA activating complex, polypeptide 4,...
ATG9B                 0.034   ATG9 autophagy related 9 homolog B 
COL2A1                0.034   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.034   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC645722             0.034   PREDICTED: similar to hCG2037003 
C17orf65              0.032   hypothetical protein LOC339201 
DACT3                 0.032   thymus expressed gene 3-like 
DMWD                  0.032   dystrophia myotonica-containing WD repeat motif prot...
LOC100293604          0.032   PREDICTED: hypothetical protein 
LOC728351             0.032   PREDICTED: hypothetical protein 
LOC100287837          0.032   PREDICTED: hypothetical protein XP_002343157 
FOXD2                 0.032   forkhead box D2 
RBM27                 0.032   RNA binding motif protein 27 
LOC100290783          0.030   PREDICTED: hypothetical protein XP_002347614 
FLJ22184              0.030   PREDICTED: hypothetical protein LOC80164 
LOC100288864          0.030   PREDICTED: hypothetical protein XP_002343435 
HCN2                  0.030   hyperpolarization activated cyclic nucleotide-gated...
KAT2B                 0.030   K(lysine) acetyltransferase 2B 
COL1A1                0.030   alpha 1 type I collagen preproprotein 
COL3A1                0.030   collagen type III alpha 1 preproprotein 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
LOC100130360          0.030   PREDICTED: hypothetical protein 
FLJ37078              0.030   hypothetical protein LOC222183 
LOC100133885          0.030   PREDICTED: hypothetical protein 
LOC100289316          0.030   PREDICTED: hypothetical protein 
LOC100289316          0.030   PREDICTED: hypothetical protein XP_002343619 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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