Guide to the Human Genome
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Name: LOC100292454 Sequence: fasta or formatted (231aa) NCBI GI: 239757444
Description:

PREDICTED: similar to hCG2019076

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         20           3
 C cysteine            4.8         11           2
 D aspartate           3.0          7           1
 E glutamate           3.5          8           1
 F phenylalanine       2.2          5           1
 G glycine            10.8         25           3
 H histidine           1.7          4           1
 I isoleucine          1.3          3           1
 K lysine              1.3          3           1
 L leucine             8.7         20           2
 M methionine          0.4          1           1
 N asparagine          2.2          5           1
 P proline            16.5         38           3
 Q glutamine           4.3         10           2
 R arginine            8.7         20           2
 S serine             10.0         23           2
 T threonine           6.5         15           3
 V valine              3.0          7           1
 W tryptophan          1.3          3           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2019076 
LOC100287166          1.000   PREDICTED: similar to hCG2019076 
LOC100287166          1.000   PREDICTED: hypothetical protein XP_002344224 
MUPCDH                0.040   mucin and cadherin-like isoform 1 
SYNJ1                 0.036   synaptojanin 1 isoform a 
SYNJ1                 0.036   synaptojanin 1 isoform b 
EP400                 0.034   E1A binding protein p400 
ALPK3                 0.034   alpha-kinase 3 
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
LOC100292845          0.032   PREDICTED: hypothetical protein 
LOC100289230          0.032   PREDICTED: hypothetical protein XP_002342600 
SETD1B                0.032   SET domain containing 1B 
CCDC88C               0.032   DVL-binding protein DAPLE 
SFPQ                  0.030   splicing factor proline/glutamine rich (polypyrimidin...
EMILIN2               0.030   elastin microfibril interfacer 2 
SHANK1                0.030   SH3 and multiple ankyrin repeat domains 1 
SRCAP                 0.028   Snf2-related CBP activator protein 
SHANK2                0.028   SH3 and multiple ankyrin repeat domains 2 isoform 1...
CPSF7                 0.025   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF7                 0.025   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF7                 0.025   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
RAX                   0.025   retina and anterior neural fold homeobox 
SYN1                  0.025   synapsin I isoform Ia 
SYN1                  0.025   synapsin I isoform Ib 
PDCD7                 0.025   programmed cell death 7 
GGN                   0.025   gametogenetin 
DRD4                  0.023   dopamine receptor D4 
LOC100127891          0.023   PREDICTED: similar to hCG2042508 
LOC728804             0.023   PREDICTED: hypothetical protein 
LOC100127891          0.023   PREDICTED: similar to hCG2042508 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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