Guide to the Human Genome
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Name: DCAF15 Sequence: fasta or formatted (600aa) NCBI GI: 78486540
Description:

DDB1 and CUL4 associated factor 15

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         44           2
 C cysteine            2.8         17           1
 D aspartate           4.8         29           3
 E glutamate           6.7         40           2
 F phenylalanine       4.0         24           1
 G glycine             7.0         42           4
 H histidine           2.5         15           1
 I isoleucine          3.2         19           1
 K lysine              4.3         26           2
 L leucine             8.8         53           4
 M methionine          2.0         12           4
 N asparagine          2.8         17           1
 P proline             7.7         46           3
 Q glutamine           3.2         19           1
 R arginine            6.0         36           3
 S serine              9.5         57           3
 T threonine           4.3         26           1
 V valine              7.7         46           2
 W tryptophan          1.3          8           2
 Y tyrosine            4.0         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DDB1 and CUL4 associated factor 15 
PELP1                 0.016   proline, glutamic acid and leucine rich protein 1 [...
HCN2                  0.014   hyperpolarization activated cyclic nucleotide-gated...
SAMD1                 0.014   sterile alpha motif domain containing 1 
DGKK                  0.013   diacylglycerol kinase kappa 
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
BAG3                  0.012   BCL2-associated athanogene 3 
SH2D3C                0.012   SH2 domain containing 3C isoform a 
CXorf67               0.012   hypothetical protein LOC340602 
KRTAP4-6              0.012   PREDICTED: keratin associated protein 4.6 
PPP1R13L              0.012   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.012   protein phosphatase 1, regulatory subunit 13 like [H...
MEX3A                 0.012   MEX3A protein 
SETDB1                0.012   SET domain, bifurcated 1 isoform 2 
SETDB1                0.012   SET domain, bifurcated 1 isoform 1 
FHDC1                 0.012   FH2 domain containing 1 
KIAA1522              0.012   hypothetical protein LOC57648 
NFATC1                0.011   nuclear factor of activated T-cells, cytosolic compo...
SPEG                  0.011   SPEG complex locus 
SCARF2                0.011   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.011   scavenger receptor class F, member 2 isoform 2 [Homo...
SYDE1                 0.011   synapse defective 1, Rho GTPase, homolog 1 
ATXN7                 0.010   ataxin 7 isoform b 
ATXN7                 0.010   ataxin 7 isoform a 
USP42                 0.010   ubiquitin specific peptidase 42 
FCHSD1                0.010   FCH and double SH3 domains 1 
HTT                   0.010   huntingtin 
VASP                  0.010   vasodilator-stimulated phosphoprotein 
LOC100292723          0.010   PREDICTED: hypothetical protein 
WASL                  0.010   Wiskott-Aldrich syndrome gene-like protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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