Guide to the Human Genome
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Name: SETDB1 Sequence: fasta or formatted (1290aa) NCBI GI: 224177469
Description:

SET domain, bifurcated 1 isoform 2

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [1291aa] SET domain, bifurcated 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         74           2
 C cysteine            2.8         36           3
 D aspartate           6.9         89           3
 E glutamate           7.2         93           2
 F phenylalanine       3.3         43           2
 G glycine             7.4         96           2
 H histidine           1.6         20           1
 I isoleucine          3.9         50           2
 K lysine              7.1         92           2
 L leucine             7.3         94           2
 M methionine          2.1         27           1
 N asparagine          3.4         44           1
 P proline             6.6         85           3
 Q glutamine           4.0         51           2
 R arginine            5.4         70           3
 S serine              9.7        125           3
 T threonine           5.6         72           2
 V valine              5.7         73           2
 W tryptophan          1.0         13           2
 Y tyrosine            3.3         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET domain, bifurcated 1 isoform 2 
SETDB1                0.998   SET domain, bifurcated 1 isoform 1 
SETDB2                0.083   SET domain, bifurcated 2 isoform b 
SETDB2                0.083   SET domain, bifurcated 2 isoform a 
EHMT2                 0.033   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.033   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT1                 0.032   euchromatic histone-lysine N-methyltransferase 1 is...
SUV39H1               0.028   suppressor of variegation 3-9 homolog 1 
SETMAR                0.023   SET domain and mariner transposase fusion 
SUV39H2               0.021   suppressor of variegation 3-9 homolog 2 
DSPP                  0.015   dentin sialophosphoprotein preproprotein 
MLL4                  0.014   myeloid/lymphoid or mixed-lineage leukemia 4 
SETD2                 0.014   SET domain containing 2 
MLL                   0.013   myeloid/lymphoid or mixed-lineage leukemia protein [...
ASH1L                 0.013   absent, small, or homeotic 1-like 
MLL2                  0.012   myeloid/lymphoid or mixed-lineage leukemia 2 
NSD1                  0.012   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.012   nuclear receptor binding SET domain protein 1 isofor...
SETD1B                0.011   SET domain containing 1B 
MLL3                  0.011   myeloid/lymphoid or mixed-lineage leukemia 3 
SETD1A                0.011   SET domain containing 1A 
WHSC1                 0.010   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.010   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.010   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.010   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
EZH1                  0.010   enhancer of zeste homolog 1 
NFRKB                 0.010   nuclear factor related to kappaB binding protein is...
NFRKB                 0.010   nuclear factor related to kappaB binding protein iso...
WHSC1L1               0.010   WHSC1L1 protein isoform long 
EZH2                  0.009   enhancer of zeste 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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