Guide to the Human Genome
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Name: NFATC1 Sequence: fasta or formatted (930aa) NCBI GI: 27502386
Description:

nuclear factor of activated T-cells, cytosolic component 1 isoform C

Referenced in:

T cells

Other entries for this name:
alt prot [825aa] nuclear factor of activated T-cells, cytosolic component 1 isoform B
alt prot [353aa] nuclear factor of activated T-cells, cytosolic component 1 isoform D
alt prot [812aa] nuclear factor of activated T-cells, cytosolic component 1 isoform E
alt prot [716aa] nuclear factor of activated T-cells, cytosolic component 1 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         67           5
 C cysteine            2.3         21           1
 D aspartate           4.4         41           2
 E glutamate           5.5         51           2
 F phenylalanine       2.3         21           2
 G glycine             6.1         57           2
 H histidine           3.8         35           2
 I isoleucine          2.8         26           2
 K lysine              3.2         30           2
 L leucine             8.8         82           2
 M methionine          0.9          8           1
 N asparagine          2.8         26           3
 P proline            13.7        127           4
 Q glutamine           4.3         40           2
 R arginine            4.9         46           2
 S serine             11.7        109           3
 T threonine           5.8         54           2
 V valine              5.7         53           2
 W tryptophan          0.6          6           1
 Y tyrosine            3.2         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear factor of activated T-cells, cytosolic compo... 
NFATC1                0.870   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.840   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.697   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.368   nuclear factor of activated T-cells, cytosolic compo...
NFATC2                0.308   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC2                0.302   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC2                0.299   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC3                0.280   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.280   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.280   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.280   nuclear factor of activated T-cells, cytoplasmic, cal...
NFATC4                0.217   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC4                0.216   nuclear factor of activated T-cells, cytoplasmic, c...
NFAT5                 0.101   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.101   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.101   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.101   nuclear factor of activated T-cells 5 isoform b [Ho...
NFAT5                 0.101   nuclear factor of activated T-cells 5 isoform a [Hom...
FMN1                  0.024   formin 1 
GGN                   0.022   gametogenetin 
PTPN23                0.021   protein tyrosine phosphatase, non-receptor type 23 [...
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
RELA                  0.019   v-rel reticuloendotheliosis viral oncogene homolog ...
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
RELA                  0.019   v-rel reticuloendotheliosis viral oncogene homolog ...
GLTSCR1               0.018   glioma tumor suppressor candidate region gene 1 [Ho...
EP300                 0.018   E1A binding protein p300 
SF3A2                 0.018   splicing factor 3a, subunit 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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