Search of human proteins with 76881819

Search of human proteins with 76881819

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|76881819 sterile alpha motif domain containing 11 [Homo
sapiens]
         (681 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]  1397   0.0  
gi|32699038 sterile alpha motif domain containing 7 [Homo sapiens]    116   8e-26
gi|37595530 polyhomeotic-like 2 isoform b [Homo sapiens]               74   6e-13
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]               74   6e-13
gi|62953127 polyhomeotic 1-like [Homo sapiens]                         69   1e-11
gi|148612879 polyhomeotic like 3 [Homo sapiens]                        68   2e-11
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     63   8e-10
gi|55770872 l(3)mbt-like 3 isoform b [Homo sapiens]                    63   1e-09
gi|55770870 l(3)mbt-like 3 isoform a [Homo sapiens]                    63   1e-09
gi|71274154 Scm-like with four mbt domains 2 [Homo sapiens]            62   2e-09
gi|158138528 l(3)mbt-like 4 [Homo sapiens]                             62   2e-09
gi|158508495 sex comb on midleg-like 4 [Homo sapiens]                  54   4e-07
gi|72534680 sex comb on midleg 1 isoform 1 [Homo sapiens]              52   2e-06
gi|6912642 sex comb on midleg 1 isoform 2 [Homo sapiens]               52   2e-06
gi|197927257 sterile alpha motif domain containing 13 isoform 2 ...    52   2e-06
gi|197927255 sterile alpha motif domain containing 13 isoform 2 ...    52   2e-06
gi|58293756 sterile alpha motif domain containing 13 isoform 1 [...    52   2e-06
gi|45120115 hypothetical protein LOC56905 [Homo sapiens]               50   9e-06
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]                 49   1e-05
gi|53692193 Scm-like with four mbt domains 1 [Homo sapiens]            49   2e-05
gi|53692191 Scm-like with four mbt domains 1 [Homo sapiens]            49   2e-05
gi|53692195 Scm-like with four mbt domains 1 [Homo sapiens]            49   2e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    49   2e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    47   6e-05
gi|91208420 bassoon protein [Homo sapiens]                             47   6e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     47   8e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      47   8e-05
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]                 47   8e-05
gi|224493912 zinc finger and SCAN domain containing 18 isoform 3...    46   1e-04
gi|226371704 zinc finger and SCAN domain containing 18 isoform 3...    46   1e-04

>gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]
          Length = 681

 Score = 1397 bits (3615), Expect = 0.0
 Identities = 681/681 (100%), Positives = 681/681 (100%)

Query: 1   MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDG 60
           MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDG
Sbjct: 1   MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDG 60

Query: 61  SGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPTLISSVHRSRHL 120
           SGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPTLISSVHRSRHL
Sbjct: 61  SGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPTLISSVHRSRHL 120

Query: 121 VMPEHQSRCEFQRGSLEIGLRPAGDLLGKRLGRSPRISSDCFSEKRARSESPQEALLLPR 180
           VMPEHQSRCEFQRGSLEIGLRPAGDLLGKRLGRSPRISSDCFSEKRARSESPQEALLLPR
Sbjct: 121 VMPEHQSRCEFQRGSLEIGLRPAGDLLGKRLGRSPRISSDCFSEKRARSESPQEALLLPR 180

Query: 181 ELGPSMAPEDHYRRLVSALSEASTFEDPQRLYHLGLPSHGEDPPWHDPPHHLPSHDLLRV 240
           ELGPSMAPEDHYRRLVSALSEASTFEDPQRLYHLGLPSHGEDPPWHDPPHHLPSHDLLRV
Sbjct: 181 ELGPSMAPEDHYRRLVSALSEASTFEDPQRLYHLGLPSHGEDPPWHDPPHHLPSHDLLRV 240

Query: 241 RQEVAAAALRGPSGLEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLS 300
           RQEVAAAALRGPSGLEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLS
Sbjct: 241 RQEVAAAALRGPSGLEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLS 300

Query: 301 PQNAPHVALGPHLRPPFLGVPSALCQTPGYGFLPPAQAEMFARQQELLRKQNLARLELPA 360
           PQNAPHVALGPHLRPPFLGVPSALCQTPGYGFLPPAQAEMFARQQELLRKQNLARLELPA
Sbjct: 301 PQNAPHVALGPHLRPPFLGVPSALCQTPGYGFLPPAQAEMFARQQELLRKQNLARLELPA 360

Query: 361 DLLRQKELESARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAPLLALPPQGPPGSGP 420
           DLLRQKELESARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAPLLALPPQGPPGSGP
Sbjct: 361 DLLRQKELESARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAPLLALPPQGPPGSGP 420

Query: 421 PTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGEDPETAAVG 480
           PTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGEDPETAAVG
Sbjct: 421 PTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGEDPETAAVG 480

Query: 481 CRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEAPAPEDV 540
           CRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEAPAPEDV
Sbjct: 481 CRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEAPAPEDV 540

Query: 541 TKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKIRAQ 600
           TKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKIRAQ
Sbjct: 541 TKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKIRAQ 600

Query: 601 VARRLGRVFYVASFPVALPLQPPTLRAPERELGTGEQPLSPTTATSPYGGGHALAGQTSP 660
           VARRLGRVFYVASFPVALPLQPPTLRAPERELGTGEQPLSPTTATSPYGGGHALAGQTSP
Sbjct: 601 VARRLGRVFYVASFPVALPLQPPTLRAPERELGTGEQPLSPTTATSPYGGGHALAGQTSP 660

Query: 661 KQENGTLALLPGAPDPSQPLC 681
           KQENGTLALLPGAPDPSQPLC
Sbjct: 661 KQENGTLALLPGAPDPSQPLC 681


>gi|32699038 sterile alpha motif domain containing 7 [Homo sapiens]
          Length = 446

 Score =  116 bits (290), Expect = 8e-26
 Identities = 108/353 (30%), Positives = 150/353 (42%), Gaps = 60/353 (16%)

Query: 328 PGYGFLPPAQAEMFARQQELLRKQNLARLELPA-DLLRQKELESARPQLL---------- 376
           PG+G LPP   +  AR+ E++++ + AR E+    + +Q+ +E   P+ L          
Sbjct: 70  PGWGILPPESIKAVARRNEMIQRHHTARTEMEMYAIYQQRRMEKINPKGLAGLGIPFLYG 129

Query: 377 -----APETAL-RPNDGAEELQRRGALLVLNHGAAPLLALPPQGPPGSGPPTPSRDSARR 430
                AP     R    A +L    + L    G   L A  P      G     R     
Sbjct: 130 SSVPAAPAAYHGRSMLPAGDLHFHRSTLRNLQGNPMLAATAPHFEESWGQRC-RRLRKNT 188

Query: 431 APRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSD------------GEDPETAA 478
             +K     A +  S+++E    +  A    ED   KD D             E P TA 
Sbjct: 189 GNQKALDSDAESSKSQAEEKILGQTHAVPYEEDHYAKDPDIEAPSNQKSSETNEKPTTAL 248

Query: 479 VGCRGP-------------TPGQAPAGGAGAE--GKGLFP------GSTLPLGFPYAVSP 517
               G              T  +A A   G E   + +F       G   P+  P     
Sbjct: 249 ANTCGELEPTHRKPWGSHTTTLKAKAWDDGKEEASEQIFATCDEKNGVCPPVPRPSLPGT 308

Query: 518 YFHTGAVGGLSMDGEEAPAPEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPL 577
           +      G LS+D       ED+ KWTVDDV SF+  L GC +Y +VF++  IDGETLPL
Sbjct: 309 HALVTIGGNLSLD-------EDIQKWTVDDVHSFIRSLPGCSDYAQVFKDHAIDGETLPL 361

Query: 578 LTEEHLLTNMGLKLGPALKIRAQVARRLGRVFY--VASFPVALPLQPPTLRAP 628
           LTEEHL   MGLKLGPALKI++QV++ +G +FY    SFP+      P   +P
Sbjct: 362 LTEEHLRGTMGLKLGPALKIQSQVSQHVGSMFYKKTLSFPIRQAFDQPADTSP 414


>gi|37595530 polyhomeotic-like 2 isoform b [Homo sapiens]
          Length = 323

 Score = 73.6 bits (179), Expect = 6e-13
 Identities = 34/66 (51%), Positives = 45/66 (68%)

Query: 537 PEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALK 596
           P + TKW V+DV  F+  L GC E    FR Q IDG+ L LL E+HL++ M +KLGPALK
Sbjct: 253 PSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALK 312

Query: 597 IRAQVA 602
           I A+++
Sbjct: 313 IYARIS 318


>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
          Length = 858

 Score = 73.6 bits (179), Expect = 6e-13
 Identities = 34/66 (51%), Positives = 45/66 (68%)

Query: 537 PEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALK 596
           P + TKW V+DV  F+  L GC E    FR Q IDG+ L LL E+HL++ M +KLGPALK
Sbjct: 788 PSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALK 847

Query: 597 IRAQVA 602
           I A+++
Sbjct: 848 IYARIS 853



 Score = 34.7 bits (78), Expect = 0.30
 Identities = 89/392 (22%), Positives = 130/392 (33%), Gaps = 67/392 (17%)

Query: 132 QRGSLEIGLRPAGDLLGKRLGRSPRISSDCFSEKRARSESPQEALLLPRELGPSMAPED- 190
           Q  S+ +   PA   L   L R+  ++S       A S   Q+A+LL     P++     
Sbjct: 134 QSSSINLAASPAAAQL---LNRAQSVNS------AAASGIAQQAVLLGNTSSPALTASQA 184

Query: 191 --HYRRLVSALSEASTFEDPQRLYHLGLPSHGEDPPWHDPPHHLPSHDLLRVRQEVAAAA 248
             + R  +   +  +T    Q     G P+         PP      +L    Q+  AAA
Sbjct: 185 QMYLRAQMLIFTPTATVATVQPELGTGSPAR--------PPTPAQVQNLTLRTQQTPAAA 236

Query: 249 LRGPSGLEAHLPS-----STAGQRRKQGLAQHRE-------GAAPAAAPSFSERELPQPP 296
             GP+  +  LPS     +  G +     AQ R        GA P  A S  E       
Sbjct: 237 ASGPTPTQPVLPSLALKPTPGGSQPLPTPAQSRNTAQASPAGAKPGIADSVMEPHKKGDG 296

Query: 297 PLLSP----------QNAPHVALGPHLRPPFLGV-PSALCQTPGYGFLPPAQAEMFARQQ 345
               P          +  P VA  P + P +  + P  L   P    L P     F  QQ
Sbjct: 297 NSSVPGSMEGRAGLSRTVPAVAAHPLIAPAYAQLQPHQLLPQPSSKHLQP----QFVIQQ 352

Query: 346 ELLRKQNLARLELPADLLRQKELESARPQL--LAPETALRPNDGAEELQRRGALLVLNHG 403
           +   +Q     + P    R        PQL  ++P  AL+P+  A  +        L   
Sbjct: 353 QPQPQQQ----QPPPQQSRPVLQAEPHPQLASVSPSVALQPSSEAHAMPLGPVTPALPLQ 408

Query: 404 AAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSED 463
                   P G     PPTP        P+ G P      P    + T A +     +  
Sbjct: 409 CPTANLHKPGGSQQCHPPTPD-----TGPQNGHPEGVPHTPQRRFQHTSAVILQLQPA-- 461

Query: 464 EPPKDSDGEDPETAAVGCR-------GPTPGQ 488
            PP+    +D +  A G +       GP+P Q
Sbjct: 462 SPPQQCVPDDWKEVAPGEKSVPETRSGPSPHQ 493


>gi|62953127 polyhomeotic 1-like [Homo sapiens]
          Length = 1004

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 541 TKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKIRAQ 600
           ++W+V++V  F+  L GC E    FR Q IDG+ L LL EEHL++ M +KLGPALKI A+
Sbjct: 938 SRWSVEEVYEFIASLQGCQEIAEEFRSQEIDGQALLLLKEEHLMSAMNIKLGPALKICAK 997

Query: 601 V 601
           +
Sbjct: 998 I 998


>gi|148612879 polyhomeotic like 3 [Homo sapiens]
          Length = 995

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 543 WTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKIRAQV 601
           WTVDDV +F+  L GC +    FR Q IDG+ L LL E+HL++ M +KLGPALKI A++
Sbjct: 931 WTVDDVWAFIHSLPGCQDIADEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKICARI 989



 Score = 33.9 bits (76), Expect = 0.51
 Identities = 69/296 (23%), Positives = 106/296 (35%), Gaps = 63/296 (21%)

Query: 224 PWHDPPHHLPSHDLLRVRQEVAAAALRGPSGLEAHLPSSTAGQRRKQGLAQHREGA---- 279
           P H PP  +  H L+  +Q+     +   +  +   PS      +  GL      A    
Sbjct: 324 PLHSPPSKVSHHQLILQQQQQQIQPITLQNSTQDPPPSQHCIPLQNHGLPPAPSNAQSQH 383

Query: 280 -------------APAAAPSFSERELPQPPPLLSPQNAPHVALGPH-LRPPFLGVPSALC 325
                        +P  + S  +  +  PPP  SP  +P + + P  L  P   V SAL 
Sbjct: 384 CSPIQSHPSPLTVSPNQSQSAQQSVVVSPPPPHSPSQSPTIIIHPQALIQPHPLVSSAL- 442

Query: 326 QTPGYGFLPPAQAEMFARQQELLRKQNL-ARLELPAD------LLRQKELESARPQLLAP 378
             PG     P   +  A Q +   + NL + L LPA        ++Q  L S   Q+++P
Sbjct: 443 -QPG-----PNLQQSTANQVQATAQLNLPSHLPLPASPVVHIGPVQQSALVSPGQQIVSP 496

Query: 379 ETALRPNDGAEELQRRGALLVLNHGAAPL-LALPPQ---GPPGSGPPTP--SRDSARRAP 432
                 +     LQ           ++P+ +A PPQ    PP   PP P  S  S +  P
Sbjct: 497 S-----HQQYSSLQ-----------SSPIPIASPPQMSTSPPAQIPPLPLQSMQSLQVQP 540

Query: 433 RKGGPGPASARPS--ESKEMTGARLWAQDGSEDEPPKDSDGEDPETAAVGCRGPTP 486
                G    + +    +E+  A    Q   +  PP       P+T AV  +   P
Sbjct: 541 EILSQGQVLVQNALVSEEELPAAEALVQLPFQTLPP-------PQTVAVNLQVQPP 589


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 63.2 bits (152), Expect = 8e-10
 Identities = 117/414 (28%), Positives = 151/414 (36%), Gaps = 101/414 (24%)

Query: 245 AAAALRGPSGLEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLSPQNA 304
           AAA  R P    A   +  +    + G    R  AAP AAP  +    P   P   P+ A
Sbjct: 142 AAAPARAPRAAAAAATAPPSPGPAQPGPRAQR--AAPLAAPPPAPAAPPAVAPPAGPRRA 199

Query: 305 PHVALGPHLRPPFLGVPSALCQTPGYGFLPPAQAEMFARQQELLRKQNLARLELPADLLR 364
           P  A+    R P L  P      P     PP Q +    +   +R    AR     +++R
Sbjct: 200 PPPAVAA--REPPLPPPPQPPAPPQQQQPPPPQPQP-PPEGGAVRAGGAARPVSLREVVR 256

Query: 365 QK--------ELESARPQ-LLAPETALRPNDGAEELQRRGALLVLNHGAAPLLALPPQGP 415
                      L   R Q LL  E A R   G  E  R GAL           ALP    
Sbjct: 257 YLGGSGGAGGRLTRGRVQGLLEEEAAAR---GRLERTRLGAL-----------ALPRGDR 302

Query: 416 PGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGED-- 473
           PG  PP                  ASARPS SK     R+  ++  ED+  +D D ED  
Sbjct: 303 PGRAPPA-----------------ASARPSRSKRGGEERVLEKEEEEDDD-EDEDEEDDV 344

Query: 474 ------PETAAV---------GCRGP----------TP---------GQAPAGGAGA--- 496
                 PE+            G RGP          TP         G+ PA G+G    
Sbjct: 345 SEGSEVPESDRPAGAQHHQLNGERGPQSAKERVKEWTPCGPHQGQDEGRGPAPGSGTRQV 404

Query: 497 --------EG--KGLFPGSTLPLGFPYAVSPYFHTGAVG---GLSMDGEEAPAPEDVTKW 543
                   EG    +  G   P   P         GA G   G     +E P+  D  +W
Sbjct: 405 FSMAAMNKEGGTASVATGPDSPSPVPLPPGKPALPGADGTPFGCPPGRKEKPS--DPVEW 462

Query: 544 TVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKI 597
           TV DV  +    +G  E    F+EQ IDG++L L+    +LT + ++LGPALKI
Sbjct: 463 TVMDVVEYFTE-AGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRLGPALKI 515


>gi|55770872 l(3)mbt-like 3 isoform b [Homo sapiens]
          Length = 755

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 540 VTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKI 597
           V+KW+ D+V  F+  L GC E+ +VF+++ IDGE   L+T+  ++  M +KLGPALKI
Sbjct: 680 VSKWSTDEVSEFIQSLPGCEEHGKVFKDEQIDGEAFLLMTQTDIVKIMSIKLGPALKI 737


>gi|55770870 l(3)mbt-like 3 isoform a [Homo sapiens]
          Length = 780

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 540 VTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKI 597
           V+KW+ D+V  F+  L GC E+ +VF+++ IDGE   L+T+  ++  M +KLGPALKI
Sbjct: 705 VSKWSTDEVSEFIQSLPGCEEHGKVFKDEQIDGEAFLLMTQTDIVKIMSIKLGPALKI 762


>gi|71274154 Scm-like with four mbt domains 2 [Homo sapiens]
          Length = 894

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 23/222 (10%)

Query: 402 HGAAPLLALPPQGP--PGSGPPTPSRDSARRAP------RKGGPGPASARPSESKEMTGA 453
           +G    ++ PP G   P SG P P+R   RR        R+      +A   E  E   A
Sbjct: 665 YGKRKKISKPPIGESNPDSGHPKPARRRKRRKSIFVQKKRRSSAVDFTAGSGEESEEEDA 724

Query: 454 RLWAQDGSEDEPPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAE------------GKGL 501
                D + +E   +   +  +T++       P +A    +G+E            G+G 
Sbjct: 725 DAMDDDTASEETGSELRDDQTDTSSAEVPSARPRRAVTLRSGSEPVRRPPPERTRRGRGA 784

Query: 502 FPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEAPAPEDVTKWTVDDVCSFVGGLSGCGEY 561
              S+   G      P    G       + E      +  +WTV DV  F+  L+ C   
Sbjct: 785 PAASSAEEG--EKCPPTKPEGTEDTKQEEEERLVLESNPLEWTVTDVVRFIK-LTDCAPL 841

Query: 562 TRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKIRAQVAR 603
            ++F+EQ IDG+ L LLT   +   M LKLGPA+K+  Q+ R
Sbjct: 842 AKIFQEQDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIER 883


>gi|158138528 l(3)mbt-like 4 [Homo sapiens]
          Length = 623

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 28/58 (48%), Positives = 40/58 (68%)

Query: 540 VTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKI 597
           V +WTVD+V  FV  L GC E+ + F+++ IDG+   LLT+  ++  M +KLGPALKI
Sbjct: 540 VARWTVDEVAEFVQSLLGCEEHAKCFKKEQIDGKAFLLLTQTDIVKVMKIKLGPALKI 597


>gi|158508495 sex comb on midleg-like 4 [Homo sapiens]
          Length = 414

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 476 TAAVGCRGPTPGQAPAGG---AGAEGKGLFP----GSTLPLGFPYAVSPYFHTGAVGGL- 527
           ++++ C+    G +  GG   A A G    P    G + P   P A SP  +T ++ G  
Sbjct: 264 SSSLYCKRQNSGDSHLGGGPAATAGGPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNR 323

Query: 528 -----SMDGEEA--PAPEDVTKWTVDDVCSFVGGLS--GCGEYTRVFREQGIDGETLPLL 578
                S D ++A  P   + + WTV+DV  FV        G +  +FR+  IDG  L LL
Sbjct: 324 CASSPSQDAQDARRPRSRNPSAWTVEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLL 383

Query: 579 TEEHLLTNMGLKLGPALKI 597
             + ++  +GLKLGPALK+
Sbjct: 384 KSDMVMKYLGLKLGPALKL 402


>gi|72534680 sex comb on midleg 1 isoform 1 [Homo sapiens]
          Length = 660

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 539 DVTKWTVDDVCSFVGGLSG-CGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKI 597
           D + WTV+DV  FV       G +  +FR+  IDG+ L LL  + ++  MGLKLGPALK+
Sbjct: 589 DPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKL 648

Query: 598 RAQVAR 603
              + R
Sbjct: 649 SYHIDR 654


>gi|6912642 sex comb on midleg 1 isoform 2 [Homo sapiens]
          Length = 591

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 539 DVTKWTVDDVCSFVGGLSG-CGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKI 597
           D + WTV+DV  FV       G +  +FR+  IDG+ L LL  + ++  MGLKLGPALK+
Sbjct: 520 DPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKL 579

Query: 598 RAQVAR 603
              + R
Sbjct: 580 SYHIDR 585


>gi|197927257 sterile alpha motif domain containing 13 isoform 2
           [Homo sapiens]
          Length = 102

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 528 SMDGEEAPAPEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNM 587
           SM+    P P D   W V DV ++   + G  E    F+EQ IDG++L L+T   +LT +
Sbjct: 19  SMENGRPPDPAD---WAVMDVVNYFRTV-GFEEQASAFQEQEIDGKSLLLMTRNDVLTGL 74

Query: 588 GLKLGPALKI 597
            LKLGPALKI
Sbjct: 75  QLKLGPALKI 84


>gi|197927255 sterile alpha motif domain containing 13 isoform 2
           [Homo sapiens]
          Length = 102

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 528 SMDGEEAPAPEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNM 587
           SM+    P P D   W V DV ++   + G  E    F+EQ IDG++L L+T   +LT +
Sbjct: 19  SMENGRPPDPAD---WAVMDVVNYFRTV-GFEEQASAFQEQEIDGKSLLLMTRNDVLTGL 74

Query: 588 GLKLGPALKI 597
            LKLGPALKI
Sbjct: 75  QLKLGPALKI 84


>gi|58293756 sterile alpha motif domain containing 13 isoform 1
           [Homo sapiens]
          Length = 116

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 528 SMDGEEAPAPEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNM 587
           SM+    P P D   W V DV ++   + G  E    F+EQ IDG++L L+T   +LT +
Sbjct: 33  SMENGRPPDPAD---WAVMDVVNYFRTV-GFEEQASAFQEQEIDGKSLLLMTRNDVLTGL 88

Query: 588 GLKLGPALKI 597
            LKLGPALKI
Sbjct: 89  QLKLGPALKI 98


>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
          Length = 1047

 Score = 49.7 bits (117), Expect = 9e-06
 Identities = 92/351 (26%), Positives = 114/351 (32%), Gaps = 65/351 (18%)

Query: 193 RRLVSALSEASTFEDPQRLYHLGLPSHGEDPPWHDPPHHLPSHDLLRVRQEVAAAALRGP 252
           R    A+SE  +    Q    LG P     P  + PPHH P H    +    A       
Sbjct: 236 RNSKQAMSEGPSSPWTQLAQPLGPPCQDTGPTHYPPPHHPPPHPPQALPCPPACRHPEKQ 295

Query: 253 SGLEAHLPSSTAGQRRKQG---------LAQHREGAAPAAAP------SFSERELPQPPP 297
                 LP    G  +  G           + +   AP   P       +    LP P P
Sbjct: 296 GSYSPALPLQPLGGHKGTGYQAGGLGSPYLRQQAAQAPYIPPLGLDAYPYPSAPLPAPSP 355

Query: 298 --LLSPQNAPHVALGPHLRPPFLGVP------SALCQTPGYGFLPPAQAEMFARQQELLR 349
              L P   P   L     P  L  P      S    +PG G  PP+Q  + A  Q    
Sbjct: 356 GLKLEPPLTPRCPL--DFAPQTLSFPYARDDLSLYGASPGLGGTPPSQNNVRAVPQPGAF 413

Query: 350 KQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEELQRR-----GALLVLNHGA 404
           ++  A   LPA    Q   E  RP   A E    P+   E+LQ R     G  +V+    
Sbjct: 414 QR--ACQPLPAS---QPCSEPVRPAQEAEEKTWLPSCRKEKLQPRLSEHSGPPIVIRDSP 468

Query: 405 APLL--ALPP------------QGPPGSGPPTPSRDSA-RRAP-RKGGPGPASARPSESK 448
            P    ALPP               P S PP P  D+    AP R     PA    +E  
Sbjct: 469 VPCTPPALPPCARECQSLPQKEDARPPSSPPMPVIDNVFSLAPYRDYLDVPAPEATTEPD 528

Query: 449 EMTGARLWAQDGSEDEPPKDSDGEDPETAAVGCRGPTPGQ-APAGGAGAEG 498
             T           D  P  S+G+D      GCRG  P Q  P+G     G
Sbjct: 529 SAT--------AEPDSAPATSEGQDK-----GCRGTLPAQEGPSGSKPLRG 566



 Score = 29.6 bits (65), Expect = 9.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 280 APAAAPSFSERELPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALC 325
           A A AP+ +    P P P+  P  A   A G  L   F G+ ++LC
Sbjct: 730 ARAQAPASARDPAPAPAPVAGPAPASTSAPGDSLEQHFTGLHASLC 775


>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
          Length = 638

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 54/229 (23%), Positives = 75/229 (32%), Gaps = 47/229 (20%)

Query: 219 HGEDPPWHDPPH-------HLPSHDLLRVRQEVAAAALRGPSGLEAHLPSSTAGQRRKQG 271
           +G  PPW  PP        H P H               GP  ++ +L S+  G     G
Sbjct: 418 NGPPPPWMQPPPPPMNQGPHPPGH--------------HGPPPMDQYLGSTPVGS----G 459

Query: 272 LAQHREGAAPAAAPSFSERELPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALCQTPGYG 331
           + +  +G      P       P PPP   P   P   L P  +      P          
Sbjct: 460 VYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPP---------- 509

Query: 332 FLPPAQAEMFARQQELLRKQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEEL 391
             PP  +   A    L  +QN       A          + P     + A   + GA ++
Sbjct: 510 --PPPPSSSMASSTPLPWQQNTTTTTTSAGT-------GSIPPWQQQQAAAAASPGAPQM 560

Query: 392 QRRGALLVLNHGAAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPA 440
           Q    ++ L  G  P   LPP  PP   PP P   +    P +GG GP+
Sbjct: 561 QGNPTMVPLPPGVQP--PLPPGAPPPPPPPPPG-SAGMMIPPRGGDGPS 606


>gi|53692193 Scm-like with four mbt domains 1 [Homo sapiens]
          Length = 866

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 52/194 (26%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query: 427 SARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGEDPETAAVGCRGPTP 486
           S RR  RK        R S S + T A      G EDE   D D  D ++ + G      
Sbjct: 665 SKRRKRRKNVFVHKKKRSSASVDNTPAGSPQGSGGEDED--DPDEGDDDSLSEGSTSEQQ 722

Query: 487 GQAPAGGAGAEGKGLFPGST---LPLGFPYAVSPYFHTGAVGGLSMDGEEAPAPEDVT-- 541
            +       +E K      T   +    P               S D  + P+P+++   
Sbjct: 723 DELQEESEMSEKKSCSSSPTQSEISTSLPPDRQRRKRELRTFSFSDDENKPPSPKEIRIE 782

Query: 542 ------------KWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGL 589
                       KW+V DV  F+   + C    R+F +Q IDG+ L LLT   +   M L
Sbjct: 783 VAERLHLDSNPLKWSVADVVRFIRS-TDCAPLARIFLDQEIDGQALLLLTLPTVQECMDL 841

Query: 590 KLGPALKIRAQVAR 603
           KLGPA+K+   + R
Sbjct: 842 KLGPAIKLCHHIER 855


>gi|53692191 Scm-like with four mbt domains 1 [Homo sapiens]
          Length = 866

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 52/194 (26%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query: 427 SARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGEDPETAAVGCRGPTP 486
           S RR  RK        R S S + T A      G EDE   D D  D ++ + G      
Sbjct: 665 SKRRKRRKNVFVHKKKRSSASVDNTPAGSPQGSGGEDED--DPDEGDDDSLSEGSTSEQQ 722

Query: 487 GQAPAGGAGAEGKGLFPGST---LPLGFPYAVSPYFHTGAVGGLSMDGEEAPAPEDVT-- 541
            +       +E K      T   +    P               S D  + P+P+++   
Sbjct: 723 DELQEESEMSEKKSCSSSPTQSEISTSLPPDRQRRKRELRTFSFSDDENKPPSPKEIRIE 782

Query: 542 ------------KWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGL 589
                       KW+V DV  F+   + C    R+F +Q IDG+ L LLT   +   M L
Sbjct: 783 VAERLHLDSNPLKWSVADVVRFIRS-TDCAPLARIFLDQEIDGQALLLLTLPTVQECMDL 841

Query: 590 KLGPALKIRAQVAR 603
           KLGPA+K+   + R
Sbjct: 842 KLGPAIKLCHHIER 855


>gi|53692195 Scm-like with four mbt domains 1 [Homo sapiens]
          Length = 866

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 52/194 (26%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query: 427 SARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGEDPETAAVGCRGPTP 486
           S RR  RK        R S S + T A      G EDE   D D  D ++ + G      
Sbjct: 665 SKRRKRRKNVFVHKKKRSSASVDNTPAGSPQGSGGEDED--DPDEGDDDSLSEGSTSEQQ 722

Query: 487 GQAPAGGAGAEGKGLFPGST---LPLGFPYAVSPYFHTGAVGGLSMDGEEAPAPEDVT-- 541
            +       +E K      T   +    P               S D  + P+P+++   
Sbjct: 723 DELQEESEMSEKKSCSSSPTQSEISTSLPPDRQRRKRELRTFSFSDDENKPPSPKEIRIE 782

Query: 542 ------------KWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGL 589
                       KW+V DV  F+   + C    R+F +Q IDG+ L LLT   +   M L
Sbjct: 783 VAERLHLDSNPLKWSVADVVRFIRS-TDCAPLARIFLDQEIDGQALLLLTLPTVQECMDL 841

Query: 590 KLGPALKIRAQVAR 603
           KLGPA+K+   + R
Sbjct: 842 KLGPAIKLCHHIER 855


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 64/251 (25%), Positives = 79/251 (31%), Gaps = 60/251 (23%)

Query: 271 GLAQHREGAAPAAAPSFSERELPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALCQTPGY 330
           GL Q+R    P    S  +  +P PPP    Q  P     P   PP              
Sbjct: 39  GLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPP-------------- 84

Query: 331 GFLPPAQAEMFARQQELLRKQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEE 390
              PP   +   +QQ     Q+ ++  +         + SA P   +   A  P  GA  
Sbjct: 85  -HQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGA-- 141

Query: 391 LQRRGALLVLNHGAAPLLALPPQGPPGSGP-PTPSRDSARRAPRKGGPGPASARPSESKE 449
                                   PPGSGP PTP+   A  +   G P P    PS    
Sbjct: 142 ------------------------PPGSGPGPTPTPPPAVTSAPPGAPPPTP--PSSGVP 175

Query: 450 MTGARLWAQDGSEDEPPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPL 509
            T              P  + G  P  AAV   GP P Q P  G G    G  PG   P 
Sbjct: 176 TT--------------PPQAGGPPPPPAAVPGPGPGPKQGP--GPGGPKGGKMPGGPKPG 219

Query: 510 GFPYAVSPYFH 520
           G P   +P  H
Sbjct: 220 GGPGLSTPGGH 230



 Score = 35.0 bits (79), Expect = 0.23
 Identities = 62/267 (23%), Positives = 77/267 (28%), Gaps = 73/267 (27%)

Query: 217 PSHGEDPPWHDPPHHLPSHDLLRVRQEVAAAALRGPSGLEAHLPSSTAGQRRKQGLAQHR 276
           P   + PP   PPH  P H     +Q+           + A  P    G     G A   
Sbjct: 72  PPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPG----VGSAPPA 127

Query: 277 EGAAPAAAPSFS-------ERELPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALCQTPG 329
             +AP A P  S           P PPP ++  +AP  A  P   PP  GVP+   Q  G
Sbjct: 128 SSSAPPATPPTSGAPPGSGPGPTPTPPPAVT--SAPPGA--PPPTPPSSGVPTTPPQAGG 183

Query: 330 YGFLPPAQAEMFARQQELLRKQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAE 389
               PP                                          P  A  P  G  
Sbjct: 184 ----PP------------------------------------------PPPAAVPGPGPG 197

Query: 390 ELQRRGALLVLNHGAAPLLALPPQGP-PGSGPPTPSRDSARRAPRKGGPGPASAR----P 444
             Q  G          P     P GP PG GP   +     + P +GG  P   R    P
Sbjct: 198 PKQGPGP-------GGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPP 250

Query: 445 SESKEMTGARLWAQDGSEDEPPKDSDG 471
              +   G       G  +E   DS+G
Sbjct: 251 YHQQHHQGPPPGGPGGRSEEKISDSEG 277


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 74/271 (27%), Positives = 91/271 (33%), Gaps = 44/271 (16%)

Query: 283 AAPSFSERELPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALCQTPGYGFLPPAQA---- 338
           AAP       P   P +SP   P     P L  P L +     Q P     PP QA    
Sbjct: 475 AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSP 534

Query: 339 -EMFARQQELLRKQNL-----------ARLELPADLLRQKELESARPQLLAPETALRPND 386
              F  Q       +L           A   L A LL+      A P L AP    RP  
Sbjct: 535 PASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR---RPPT 591

Query: 387 GAEELQRRGALLVLNHGAAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSE 446
              +    G  L         LAL P GP    PP PSR  +         G +S+  S 
Sbjct: 592 PGPDTSVSGPRLT--------LALAP-GP----PPPPSRSPSSTLSGPDLAGHSSSATST 638

Query: 447 SKEMTGARLWAQDGSEDEPPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGST 506
            +E+ G     + G+   PP D++      AA   RGP P  A  G  GA          
Sbjct: 639 PEELRGYDSGPEGGAAASPPPDAELAACHPAA-WSRGPAPPLAFRGAPGA---------- 687

Query: 507 LPLGFPYAVSPYFHTGAVGGLSMDGEEAPAP 537
            PL +P A  P    G       +G E+  P
Sbjct: 688 -PLPWPPATGPGSADGLCTIYETEGPESATP 717



 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 75/274 (27%), Positives = 90/274 (32%), Gaps = 54/274 (19%)

Query: 280 APAAAPSFSERELPQP---PPLLSPQ----NAPHVALGPHLRPPFLGVPSALCQTPGYG- 331
           +P A+P  S    P P   PPL +P       P  A      PP   +PS     PG   
Sbjct: 484 SPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAP 543

Query: 332 FLPPAQAEMFARQQELLRKQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEEL 391
           F P A   M      L      A   L A LL+      A P L AP    RP     + 
Sbjct: 544 FSPSASLPM----SPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR---RPPTPGPDT 596

Query: 392 QRRGALLVLNHGAAPLLALPPQGPPGS---GPPTPSRDSAR-------RAPRKGGPGPAS 441
              G  L L    AP    PP   P S   GP      S+        R    G  G A+
Sbjct: 597 SVSGPRLTL--ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAA 654

Query: 442 ARPSESKEMTGAR--LWAQD--------GSEDEP--------PKDSDG-------EDPET 476
           A P    E+       W++         G+   P        P  +DG       E PE+
Sbjct: 655 ASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPES 714

Query: 477 A--AVGCRGPTPGQAPAGGAGAEGKGLFPGSTLP 508
           A  A G   P P    +GG  A G G    S  P
Sbjct: 715 ATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSP 748



 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 83/358 (23%), Positives = 112/358 (31%), Gaps = 65/358 (18%)

Query: 165 KRARSESPQEALLLPRELGPSMAPEDHYRRLVSALSEASTFEDPQRLYHLGLPSHGEDPP 224
           +R+R+   +  L  P        P +  R+ VS+ SE ST E             G   P
Sbjct: 178 RRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRP 237

Query: 225 WHDPPHHLPSHDLLRVRQEVAAAALRGPSGLEAHLPSSTAGQRRKQGL--------AQHR 276
                    S  L      +++ A  GPS        +   Q + +GL           R
Sbjct: 238 --------ASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR 289

Query: 277 EGAAPAAAP-SFSERELPQPPPLLSPQNAPHVALGPH-------------LRPPFLGVPS 322
           + AAPA  P S S    P P   L  Q  P +   PH             L PP    P 
Sbjct: 290 KDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPP 349

Query: 323 ALCQTPGYGFLPPAQAEMFARQQELLRKQNLARLELPADLLRQKELESARPQLLAPETAL 382
           +L   P     PP+QA        L    +     LP+  L    L +  PQ   P  AL
Sbjct: 350 SLQTLPSPPATPPSQATTSLGSPTLQATHSF----LPSPPL--SPLATPPPQ-APPALAL 402

Query: 383 RPNDGAEELQRRGALLVLNHGAAPLLALPPQGP----------PGSGPPTPSRDSARRAP 432
            P            L       +PL    PQ P          P S PP+P   +    P
Sbjct: 403 PPLQAPPSPPASPPL-------SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPP 455

Query: 433 RKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGEDPETAAVGCRGPTPGQAP 490
                 P++  PS++     A           PP       P +  +      P QAP
Sbjct: 456 ASPPVSPSATPPSQAPPSLAA-----------PPLQVPPSPPASPPMSPSATPPPQAP 502


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 93/348 (26%), Positives = 125/348 (35%), Gaps = 88/348 (25%)

Query: 170  ESPQEALLLPRELGPSM--APEDHYRRLVSALSEASTFEDPQRLYHLGLPSHGEDPPWHD 227
            E P+E L    E GP    + ++H        S   T E+P R        H  D   H+
Sbjct: 3622 EPPEEGLWPHDEGGPGRHASAKEHRHGDHGRHSGRHTGEEPGRR---AAKPHARDLGRHE 3678

Query: 228  P-PHHLPSHDLLRVRQEVAAAALRG----PSGLEAHLPSSTAGQRR-----KQGLAQHRE 277
              PH  PS           A   +G    PS  E   PS  +         K+G  Q   
Sbjct: 3679 ARPHSQPS--------SAPAMPKKGQPGYPSSAEYSQPSRASSAYHHASDSKKGSRQAHS 3730

Query: 278  GAAPAAAPSFSERELPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALCQTPGYGFLPPAQ 337
            G  PAA  S +E   PQ  P L  + A   A GP              Q+P    +P   
Sbjct: 3731 G--PAALQSKAE---PQAQPQLQGRQA---APGPQQS-----------QSPSSRQIPSGA 3771

Query: 338  AEMFARQQELLRKQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEELQRRGAL 397
            A   +RQ +  ++Q    L+ P   L Q  L+    Q   P T                 
Sbjct: 3772 A---SRQPQTQQQQQGLGLQPPQQALTQARLQ----QQSQPTT----------------- 3807

Query: 398  LVLNHGAAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWA 457
                 G+AP  A  P G P  GP T +             GP  A P  +++  G++  A
Sbjct: 3808 ----RGSAPA-ASQPAGKPQPGPSTAT-------------GPQPAGPPRAEQTNGSKGTA 3849

Query: 458  QDGSEDEPPKDSDGEDPETAAV--GCR-GPTPGQAPAGGAGAEGKGLF 502
            +   +   P+      P  A V  G R G TPG APAG  GA+G+ +F
Sbjct: 3850 KAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPG-APAGQPGADGESVF 3896



 Score = 37.0 bits (84), Expect = 0.060
 Identities = 37/123 (30%), Positives = 45/123 (36%), Gaps = 21/123 (17%)

Query: 413 QGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGE 472
           +G  G GP  P        P   GPGP + +P  S    G +L A             G 
Sbjct: 8   EGGAGDGPLPPGGAGPGPGP---GPGPGAGKPP-SAPAGGGQLPAA------------GA 51

Query: 473 DPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGLSMDGE 532
              TA     GP PG  P  G G+  + L P    PLG   A SP   T      +  G 
Sbjct: 52  ARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKE--PLGNQRAASP---TPKQASATTPGH 106

Query: 533 EAP 535
           E+P
Sbjct: 107 ESP 109



 Score = 36.6 bits (83), Expect = 0.079
 Identities = 82/336 (24%), Positives = 112/336 (33%), Gaps = 52/336 (15%)

Query: 212  YHLGLPSHGEDPPWHDPPHHLPSHDLLRVRQEVAAAAL---RGPSGLEAH---------- 258
            YHLG     E+  W D P    S D  R     A ++    RGP+    H          
Sbjct: 3574 YHLGQ----EETDWFDKPRDARS-DRFRHHGGHAVSSSSQKRGPARHSYHDYDEPPEEGL 3628

Query: 259  LPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLSPQNAPHVA-LGPHLRPPF 317
             P    G  R     +HR G         S R   + P   + +  PH   LG H   P 
Sbjct: 3629 WPHDEGGPGRHASAKEHRHGDHGR----HSGRHTGEEPGRRAAK--PHARDLGRHEARPH 3682

Query: 318  LGVPSALCQT----PGYG----FLPPAQAEMFARQQELLRKQNLARLELPADLLRQKELE 369
                SA        PGY     +  P++A          +K +      PA  L+ K   
Sbjct: 3683 SQPSSAPAMPKKGQPGYPSSAEYSQPSRASSAYHHASDSKKGSRQAHSGPA-ALQSKAEP 3741

Query: 370  SARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAPLLALPPQGPPGSG--PP----TP 423
             A+PQL   + A  P        R+     +  GAA       Q   G G  PP    T 
Sbjct: 3742 QAQPQLQGRQAAPGPQQSQSPSSRQ-----IPSGAASRQPQTQQQQQGLGLQPPQQALTQ 3796

Query: 424  SRDSARRAPRKGGPGPASARPSESKE-----MTGARLWAQDGSEDEPPKDSDGEDPETAA 478
            +R   +  P   G  PA+++P+   +      TG +      +E         + P+   
Sbjct: 3797 ARLQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQQGR 3856

Query: 479  VGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYA 514
                 P PG  PAG       G  PG+  P G P A
Sbjct: 3857 APQAQPAPGPGPAGVKAGARPGGTPGA--PAGQPGA 3890



 Score = 33.1 bits (74), Expect = 0.87
 Identities = 54/211 (25%), Positives = 75/211 (35%), Gaps = 29/211 (13%)

Query: 250 RGPSGLEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLSPQNAPHVAL 309
           RGP G +   P S   +  +   A    G A AAAP    R  PQPP    P  A     
Sbjct: 267 RGPGGPQ---PGSRQAETAR---ATSVPGPAQAAAPPEVGRVSPQPPQPTKPSTA----- 315

Query: 310 GPHLRPPFLGVP--SALCQTPGYGFLPPAQ----AEMFARQQELL-RKQNLARLELPADL 362
               RPP    P  SA     G G     Q     ++F     LL +   L  ++  AD 
Sbjct: 316 --EPRPPAGEAPAKSATAVPAGLGATEQTQEGLTGKLFGLGASLLTQASTLMSVQPEADT 373

Query: 363 LRQKELESARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAPLLALPP--QGPPGSGP 420
             Q       P+++        ND ++E   +        G AP     P  +  PGSGP
Sbjct: 374 QGQPAPSKGTPKIVF-------NDASKEAGPKPLGSGPGPGPAPGAKTEPGARMGPGSGP 426

Query: 421 PTPSRDSARRAPRKGGPGPASARPSESKEMT 451
               +     +P+ G     +A  + +K  T
Sbjct: 427 GALPKTGGTTSPKHGRAEHQAASKAAAKPKT 457



 Score = 32.0 bits (71), Expect = 1.9
 Identities = 34/120 (28%), Positives = 42/120 (35%), Gaps = 15/120 (12%)

Query: 403 GAAPLLALPPQGPPGSGP---PTPSRDSARRAPRK--GGPGPASARPSESKEMT------ 451
           GAA   A+PP   PG GP   P P   S R  P++  G    AS  P ++   T      
Sbjct: 50  GAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESP 109

Query: 452 -GARLWAQDGSEDEPPKDSDGEDPETAAVG---CRGPTPGQAPAGGAGAEGKGLFPGSTL 507
              R     G E + P+ +   D  T   G      P  G  P            P STL
Sbjct: 110 RETRAQGPAGQEADGPRRTLQVDSRTQRSGRSPSVSPDRGSTPTSPYSVPQIAPLPSSTL 169



 Score = 31.2 bits (69), Expect = 3.3
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 19/88 (21%)

Query: 415  PPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGEDP 474
            PP  GP    + +A +AP  GG       PS  +   GA        E+  P  +     
Sbjct: 2274 PPAEGPVYLGKPAAAKAPGAGG-------PSRPEMPVGA------AREEPLPTTTPAAIK 2320

Query: 475  ETAAVGCRGPTPGQ------APAGGAGA 496
            E A      P  GQ      AP GG+GA
Sbjct: 2321 EAAGAPAPAPLAGQKPPADAAPGGGSGA 2348



 Score = 29.6 bits (65), Expect = 9.6
 Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 50/182 (27%)

Query: 293 PQPPPLLS--PQNAPHVALGP----HLRPPFLGVPSALCQTPGYGFLPPAQAEMFARQQE 346
           P PPP     P  APH A G        P  LG PS            PA+A        
Sbjct: 530 PLPPPTSQQPPVGAPHRASGTSPLKQKGPQGLGQPSGPL---------PAKA-------- 572

Query: 347 LLRKQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAP 406
                  + L   A  L  K    A+P L A E +  P+   E+  R            P
Sbjct: 573 -------SPLSTKASPLPSKASPQAKP-LRASEPSKTPSSVQEKKTR-----------VP 613

Query: 407 LLALPPQGPPGSGPPTPSRDSARRAPRKGGPG-------PASARPSESKEMTGARLWAQD 459
             A P   PP    PTP+    +   R+  P        P + +  E++++ G + ++QD
Sbjct: 614 TKAEPMPKPPPETTPTPATPKVKSGVRRAEPATPVVKAVPEAPKGGEAEDLVG-KPYSQD 672

Query: 460 GS 461
            S
Sbjct: 673 AS 674


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 44/117 (37%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 423 PSRDSARRAPRK-GGPGPASARPSESKEMTGARLWAQDGSEDEP--PKDSDGEDPETAAV 479
           P RD AR AP   G PGPA A        TG R  A       P  P+ S GE  E   V
Sbjct: 669 PGRDGARGAPGAVGAPGPAGA--------TGDRGEAGAAGPAGPAGPRGSPGERGE---V 717

Query: 480 GCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEAPA 536
           G  GP     PAG AG  G     G+  P G    V P    GA G    +G   PA
Sbjct: 718 GPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPA 774



 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 44/135 (32%), Positives = 52/135 (38%), Gaps = 20/135 (14%)

Query: 414 GPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEM--TGARLWA-------QDGSEDE 464
           G PG    T  R  A  A   G  GP  + P E  E+   G   +A       Q G++ E
Sbjct: 682 GAPGPAGATGDRGEAGAAGPAGPAGPRGS-PGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740

Query: 465 P----PKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFH 520
                PK  +G    T  VG  GP     P G AG+ G G  PG T   GFP A      
Sbjct: 741 RGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMT---GFPGAAG---R 794

Query: 521 TGAVGGLSMDGEEAP 535
           TG  G   + G   P
Sbjct: 795 TGPPGPSGISGPPGP 809



 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 43/134 (32%), Positives = 51/134 (38%), Gaps = 25/134 (18%)

Query: 413 QGPPGS----GPPTPSRDSARRAPR-----KGGPGPASARPSESKEMTGARLWAQDGSED 463
           +G PGS    GPP PS +  +R P       G PGP   R S              GS  
Sbjct: 360 KGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSP-------------GSRG 406

Query: 464 EPPKDSD-GEDPETAAVGCRGPTPGQAPAGGAGAEGK-GLFPGSTLPLGFPYAVSPYFHT 521
            P  D   G      + G  GP   + P G AG  G+ GL     LP G P  + P    
Sbjct: 407 LPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLP-GSPGNIGPAGKE 465

Query: 522 GAVGGLSMDGEEAP 535
           G VG   +DG   P
Sbjct: 466 GPVGLPGIDGRPGP 479



 Score = 38.1 bits (87), Expect = 0.027
 Identities = 44/157 (28%), Positives = 49/157 (31%), Gaps = 24/157 (15%)

Query: 406 PLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKE----MTGAR------- 454
           P  A  P GPPG            R   +G  GP  AR            G R       
Sbjct: 128 PAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDG 187

Query: 455 LWAQDGS---EDEPPKDSDGEDP----------ETAAVGCRGPTPGQAPAGGAGAEGKGL 501
           L  Q G+   + EP    +   P          E   VG  GP   +   G  G  G   
Sbjct: 188 LKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAG 247

Query: 502 FPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEAPAPE 538
             GS  P GFP A  P    GAVG     G   P  E
Sbjct: 248 PIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGE 284



 Score = 37.0 bits (84), Expect = 0.060
 Identities = 34/99 (34%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 412 PQGPPGS-GPPTPSRDSARRAPRKG---GPGPASAR-PSESKEMTGARLWAQDGSED-EP 465
           P GPPG  GPP    + A +   KG   GPGP     P       GA      G +  + 
Sbjct: 61  PPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGA-----PGPQGFQG 115

Query: 466 PKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPG 504
           P    GE  +T   G RGP      AG  G  GK   PG
Sbjct: 116 PAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPG 154



 Score = 37.0 bits (84), Expect = 0.060
 Identities = 48/156 (30%), Positives = 52/156 (33%), Gaps = 39/156 (25%)

Query: 414 GPPGSGPPTPSRDSARRAP----RKGGPGPASARPSESKEMTGARLWAQDGSEDEPP--K 467
           G PG    TP +  AR  P    R G PGPA AR S+     G    A       PP   
Sbjct: 202 GAPGENG-TPGQTGARGLPGERGRVGAPGPAGARGSDGS--VGPVGPAGPIGSAGPPGFP 258

Query: 468 DSDGEDPETAAVGCRGPT--------------------PGQAPAGG-------AGAEGKG 500
            + G   E  AVG  GP                     PG   A G       AG  G  
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVA 318

Query: 501 LFPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEAPA 536
             PG   P G P    P    GA G   + GE  PA
Sbjct: 319 GAPGLPGPRGIP---GPVGAAGATGARGLVGEPGPA 351



 Score = 37.0 bits (84), Expect = 0.060
 Identities = 37/126 (29%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 412  PQGPPGS-GPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPP-KDS 469
            P GP G+ GP  PS     R   KG PG    R           L   +G +  P     
Sbjct: 986  PVGPAGAVGPRGPSGPQGIRGD-KGEPGEKGPRGLPG-------LKGHNGLQGLPGIAGH 1037

Query: 470  DGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGLSM 529
             G+     +VG  GP     P+G AG +G+   PG+  P G      P  H G  G    
Sbjct: 1038 HGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIR---GPQGHQGPAGPPGP 1094

Query: 530  DGEEAP 535
             G   P
Sbjct: 1095 PGPPGP 1100



 Score = 36.6 bits (83), Expect = 0.079
 Identities = 45/149 (30%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 403 GAAPLLALPPQGPPG-SGPPTPS--RDSARRAPRKGGPGPASAR-PSESKEMTGARLWAQ 458
           G  P+  + P+GPPG +G P P   +  A      G  GPA AR P+      G     +
Sbjct: 89  GPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAG-----E 143

Query: 459 DGSEDEPPKDSDGEDPETAAVGCRG--PTPG----QAPAGGAGAEGKGLFPGSTLPLGFP 512
           DG   +P +   GE       G RG   TPG    +   G  G +G    PG+    G P
Sbjct: 144 DGHPGKPGR--PGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEP 201

Query: 513 YAVSPYFHTGAVGGLSMDGEE----APAP 537
            A       G  G   + GE     AP P
Sbjct: 202 GAPGENGTPGQTGARGLPGERGRVGAPGP 230



 Score = 36.6 bits (83), Expect = 0.079
 Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 412 PQGPPGSGPPTPSRDSARRAPRKGGPGPASAR----PSESKEMTGARLWAQDGSEDEP-P 466
           P G PG+   T ++ +A      G PG    R    P  +   TGAR     G   EP P
Sbjct: 296 PPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGAR-----GLVGEPGP 350

Query: 467 KDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFP 512
             S GE       G  GP     P+G  G  G     GS  P G P
Sbjct: 351 AGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPP 396



 Score = 34.3 bits (77), Expect = 0.39
 Identities = 34/121 (28%), Positives = 41/121 (33%), Gaps = 22/121 (18%)

Query: 412 PQGPPG-------SGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDE 464
           P GPPG       +GPP P           G PGP     + + +  G  +    G    
Sbjct: 46  PPGPPGRDGEDGPTGPPGPP----------GPPGPPGLGGNFAAQYDGKGVGLGPG---- 91

Query: 465 PPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAV 524
            P    G      A G  GP   Q PAG  G  G+    G+  P G P       H G  
Sbjct: 92  -PMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKP 150

Query: 525 G 525
           G
Sbjct: 151 G 151



 Score = 34.3 bits (77), Expect = 0.39
 Identities = 38/128 (29%), Positives = 41/128 (32%), Gaps = 20/128 (15%)

Query: 412 PQGPPG----SGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPK 467
           P GP G     GPP P+     R PR G  GP   R  E     GA            P 
Sbjct: 797 PPGPSGISGPPGPPGPAGKEGLRGPR-GDQGPVG-RTGE----VGA----------VGPP 840

Query: 468 DSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGL 527
              GE   +   G  GP     P G  GA G    PGS    G P         G +G  
Sbjct: 841 GFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIA 900

Query: 528 SMDGEEAP 535
              G   P
Sbjct: 901 GPPGARGP 908



 Score = 33.5 bits (75), Expect = 0.67
 Identities = 34/129 (26%), Positives = 43/129 (33%), Gaps = 17/129 (13%)

Query: 413 QGPPG----------SGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSE 462
           QGPPG           GPP P     +  P   GP     +P E        L    G  
Sbjct: 531 QGPPGPQGVQGGKGEQGPPGPP--GFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAG-- 586

Query: 463 DEPPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTG 522
              P+   G   E+ A G  GP   + P+G  G +G    PG    +G      P    G
Sbjct: 587 ---PRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPG 643

Query: 523 AVGGLSMDG 531
             G   + G
Sbjct: 644 ERGAAGIPG 652



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 33/116 (28%), Positives = 40/116 (34%), Gaps = 12/116 (10%)

Query: 406 PLLALPPQGPPGSGPPTPSRDSA---------RRAPRKGGPGPASARPSESKEMTGARLW 456
           P+ A  P GP G   P  SR              A R G PGP+             +  
Sbjct: 758 PVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEG 817

Query: 457 AQDGSEDEPPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFP 512
            +    D+ P    G   E  AVG  G    + P+G AG  G    PG    LG P
Sbjct: 818 LRGPRGDQGPV---GRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAP 870



 Score = 30.8 bits (68), Expect = 4.3
 Identities = 36/143 (25%), Positives = 48/143 (33%), Gaps = 18/143 (12%)

Query: 412 PQGPPGSGPPTPSRDSARRAPRKGGPGP----ASARPSESKEMTGAR------------- 454
           P+GP G       +  A  A  +G PGP     +  P   + + G +             
Sbjct: 497 PKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQG 556

Query: 455 LWAQDGSEDEPPKDSD-GEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPY 513
           L    G   E  K  + G   E    G  GP   + P G +GA G     GS  P G P 
Sbjct: 557 LPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPG 616

Query: 514 AVSPYFHTGAVGGLSMDGEEAPA 536
                   G VG +   G   P+
Sbjct: 617 PDGNKGEPGVVGAVGTAGPSGPS 639



 Score = 30.8 bits (68), Expect = 4.3
 Identities = 45/161 (27%), Positives = 54/161 (33%), Gaps = 35/161 (21%)

Query: 413 QGPPG-SGPPTPSRDSARRAPRKGGPGP-------------ASARPSESKEMTGAR---- 454
           +GPPG SG   P+     R P  G PGP              +A PS    + G R    
Sbjct: 591 RGPPGESGAAGPTGPIGSRGP-SGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAG 649

Query: 455 LWAQDGSEDEPP-------KDSDGEDPETAAVGCRGPTP-----GQA----PAGGAGAEG 498
           +    G + EP           DG      AVG  GP       G+A    PAG AG  G
Sbjct: 650 IPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRG 709

Query: 499 KGLFPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEAPAPED 539
                G   P G      P    G  G     G + P  E+
Sbjct: 710 SPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGEN 750



 Score = 30.0 bits (66), Expect = 7.4
 Identities = 39/128 (30%), Positives = 44/128 (34%), Gaps = 27/128 (21%)

Query: 412 PQGPPGS-GPP----TPSRDSARRAPRKGGP-GPASARPSE----------------SKE 449
           P GP GS GPP     P       A    GP GPA  R                   +  
Sbjct: 245 PAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANG 304

Query: 450 MTGAR----LWAQDGSEDEP-PKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPG 504
           +TGA+    L    G+   P P+   G      A G RG      PAG  G  G    PG
Sbjct: 305 LTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPG 364

Query: 505 STLPLGFP 512
           S  P G P
Sbjct: 365 SAGPQGPP 372



 Score = 30.0 bits (66), Expect = 7.4
 Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 28/149 (18%)

Query: 414 GPPG-SGPPTPSRDSARRAPRKGGPGPASARPSES-KEMTGAR----LWAQDGSEDEP-- 465
           GPPG +G   PS ++    P  G PGP     +     + G+R    L    G+  EP  
Sbjct: 838 GPPGFAGEKGPSGEAGTAGP-PGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGP 896

Query: 466 -----PKDSDGEDPETAAVGCRGPTPGQAPAGG-------------AGAEGKGLFPGSTL 507
                P  + G      + G  G  PG+A   G              G +G+  +PG+  
Sbjct: 897 LGIAGPPGARGPPGAVGSPGVNG-APGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIG 955

Query: 508 PLGFPYAVSPYFHTGAVGGLSMDGEEAPA 536
           P+G   A  P+   G  G     GE  P+
Sbjct: 956 PVGAAGAPGPHGPVGPAGKHGNRGETGPS 984



 Score = 30.0 bits (66), Expect = 7.4
 Identities = 35/126 (27%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 409  ALPPQGPPG-SGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPP- 466
            A+   GP G +GPP      AR  P   G    +  P E+            G + +P  
Sbjct: 890  AVGEPGPLGIAGPP-----GARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGH 944

Query: 467  KDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGG 526
            K   G       VG  G      P G AG  G     G + P+G   AV P   +G  G 
Sbjct: 945  KGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGI 1004

Query: 527  LSMDGE 532
                GE
Sbjct: 1005 RGDKGE 1010


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 50/150 (33%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 394 RGALLVLNHGAAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGA 453
           RGA      G  P +A PP G   +GPP P      R    GGPG A           GA
Sbjct: 827 RGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGS-PGGPGAAG--------FPGA 877

Query: 454 R-LWAQDGSEDEP----PKDSDGEDPETAAVGCRGP--TPG-QAPAGGAGAEGKGLFPGS 505
           R L    GS   P    P  S G+D      G  G   +PG   P G AG  G+   PG+
Sbjct: 878 RGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGA 937

Query: 506 TLPLGFPYAVSPYFHTGAVGGLSMDGEEAP 535
             P G P  +     TGA G     G   P
Sbjct: 938 QGPPGAPGPLGIAGITGARGLAGPPGMPGP 967



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 44/130 (33%), Positives = 51/130 (39%), Gaps = 25/130 (19%)

Query: 414 GPPGS----GPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSED-EPPKD 468
           GPPGS    GPP PS    +  P    PGPA          TGA      GS     PK 
Sbjct: 882 GPPGSNGNPGPPGPSGSPGKDGP----PGPAGN--------TGA-----PGSPGVSGPKG 924

Query: 469 SDGEDPETAAVGCRGPTPGQAPAGGAGAEG-KGLF--PGSTLPLGFPYAVSPYFHTGAVG 525
             G+  E  + G +GP     P G AG  G +GL   PG   P G P        +G  G
Sbjct: 925 DAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPG 984

Query: 526 GLSMDGEEAP 535
              + GE  P
Sbjct: 985 ANGLSGERGP 994



 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 41/137 (29%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 414  GPPGS-GPPTPSRDSARRAPR--KGGPGPASAR-------PSESKEMTGAR----LWAQD 459
            GPPG  GP   S D     P    G PGPA +R       P   K  TG R    +    
Sbjct: 1050 GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHR 1109

Query: 460  GSEDEP-PKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPY 518
            G    P    S G   +  A+G  GP   + P G +G  GK    G   P+G P      
Sbjct: 1110 GFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNR 1169

Query: 519  FHTGAVGGLSMDGEEAP 535
               G+ G     G+  P
Sbjct: 1170 GERGSEGSPGHPGQPGP 1186



 Score = 38.9 bits (89), Expect = 0.016
 Identities = 39/128 (30%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 412 PQGPPGS-------GPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDE 464
           PQGPPG        GPP P+         KG  GP   +  +    TG     ++G   E
Sbjct: 604 PQGPPGKNGETGPQGPPGPTGPGGD----KGDTGPPGPQGLQGLPGTGGPP-GENGKPGE 658

Query: 465 P-PKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGA 523
           P PK   G        G  G    + P G AGA G     G   P G   A  P    GA
Sbjct: 659 PGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGA 718

Query: 524 VGGLSMDG 531
            G   + G
Sbjct: 719 AGTPGLQG 726



 Score = 38.1 bits (87), Expect = 0.027
 Identities = 40/143 (27%), Positives = 48/143 (33%), Gaps = 28/143 (19%)

Query: 412 PQGPPG----------SGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGS 461
           PQGPPG          +GPP P     +  P  GGP   + +P E      A      G 
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGPQ--GLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGG 673

Query: 462 EDEPPKDSDGEDPETAAV-------GCRGPTPGQA------PAGGAGAEGKGLFPGSTLP 508
           + +     +   P  A         G  GP  G+       P G AG  G    PG    
Sbjct: 674 KGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGG 733

Query: 509 LGFPYAVSPYFHTGAVGGLSMDG 531
           LG P    P    G  GG   DG
Sbjct: 734 LGSP---GPKGDKGEPGGPGADG 753



 Score = 37.7 bits (86), Expect = 0.035
 Identities = 40/119 (33%), Positives = 46/119 (38%), Gaps = 17/119 (14%)

Query: 412 PQGPPGS-GPPTPSRDSARRAPRKGGPG-PASARPSESKEMTG-------ARLWAQDGSE 462
           P+GP G  GPP P+     +    G PG P  A P  S    G       A      G  
Sbjct: 760 PRGPTGPIGPPGPAGQPGDKG-EGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQN 818

Query: 463 DEP----PKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEG-KGL--FPGSTLPLGFPYA 514
            EP     + + GE  E    G  GP  G  PAG  G +G KG    PG     GFP A
Sbjct: 819 GEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGA 877



 Score = 37.4 bits (85), Expect = 0.046
 Identities = 41/135 (30%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 412 PQGPPGSGPPTPSRDSARRAPRKGGPGPASAR----PSESKEMTGARLWAQDGSEDEPPK 467
           P GPPG       +     A   G PG   AR    P+ +    G R     G   EP K
Sbjct: 382 PPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLR-----GGAGEPGK 436

Query: 468 DSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAV----SPYFHTGA 523
             +G   E    G RG        G  G +GK   PG     G P A     +P F  G 
Sbjct: 437 --NGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFR-GP 493

Query: 524 VGGLSMDGEEAPAPE 538
            G   + GE+ PA E
Sbjct: 494 AGPNGIPGEKGPAGE 508



 Score = 37.4 bits (85), Expect = 0.046
 Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 11/126 (8%)

Query: 412  PQGPPGSGPPTPSRDSARRAPRKGGPG----PASARPSESKEMTGARLWAQDGSEDEP-- 465
            PQGP G    T  R +A     +G PG    P S  P+  +   G+   A       P  
Sbjct: 1087 PQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSG 1146

Query: 466  PKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVG 525
            P   DG       +G  GP   +   G  G+EG    PG   P G P A  P    G VG
Sbjct: 1147 PPGKDGTSGHPGPIGPPGPRGNR---GERGSEGSPGHPGQPGPPGPPGAPGPC--CGGVG 1201

Query: 526  GLSMDG 531
              ++ G
Sbjct: 1202 AAAIAG 1207



 Score = 36.6 bits (83), Expect = 0.079
 Identities = 38/131 (29%), Positives = 45/131 (34%), Gaps = 13/131 (9%)

Query: 412 PQGPPGS-------GPPTPSRDSARRAPRKGGPGP----ASARPSESKEMTGARLWAQDG 460
           P G PG+       GPP P+  +     R G   P    A   P    E   A +    G
Sbjct: 400 PAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPG 459

Query: 461 SEDEPPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFH 520
           ++ E  KD  G   E  A G  G    +   G  G  G    PG   P G   A  P   
Sbjct: 460 AKGEDGKD--GSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGP 517

Query: 521 TGAVGGLSMDG 531
            GA G    DG
Sbjct: 518 RGAAGEPGRDG 528



 Score = 36.2 bits (82), Expect = 0.10
 Identities = 35/131 (26%), Positives = 38/131 (29%), Gaps = 11/131 (8%)

Query: 412 PQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEP------ 465
           P G PG   P   R     AP   GP  A+  P       G  +    GS   P      
Sbjct: 496 PNGIPGEKGPAGERG----APGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKP 551

Query: 466 -PKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAV 524
            P  S GE       G  GP       G  G +G    PG     G P    P    G  
Sbjct: 552 GPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKN 611

Query: 525 GGLSMDGEEAP 535
           G     G   P
Sbjct: 612 GETGPQGPPGP 622



 Score = 35.4 bits (80), Expect = 0.18
 Identities = 36/107 (33%), Positives = 43/107 (40%), Gaps = 14/107 (13%)

Query: 406 PLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKE-MTGAR--LWAQDGSE 462
           P LA  P    G+GPP P        P    PGP  A  +   + M G R  L +     
Sbjct: 686 PGLAGAPGLRGGAGPPGPEGGKGAAGP----PGPPGAAGTPGLQGMPGERGGLGSPGPKG 741

Query: 463 DEPPKDSDGEDPETAAVGCRGPT-----PGQAPAGGAGAEGKGLFPG 504
           D+      G D      G RGPT     PG  PAG  G +G+G  PG
Sbjct: 742 DKGEPGGPGADGVPGKDGPRGPTGPIGPPG--PAGQPGDKGEGGAPG 786



 Score = 35.0 bits (79), Expect = 0.23
 Identities = 39/131 (29%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 412 PQGPPG----SGPPTPSRDSAR--RAPRKGGPGPASAR-PSESKEMTGARLWAQDGSEDE 464
           P GPPG    SGP     +S R  R   +G PGP   + P+      G +     G +  
Sbjct: 214 PPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMK--GHRGFDGR 271

Query: 465 PPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAV 524
                +GE  ET A G +G        G  G  G    PG     G P A     + GA 
Sbjct: 272 -----NGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGAR 326

Query: 525 GGLSMDGEEAP 535
           G    DG+  P
Sbjct: 327 GS---DGQPGP 334



 Score = 34.3 bits (77), Expect = 0.39
 Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 27/122 (22%)

Query: 413 QGPPG-SGPPTPSRDSARRAP--RKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDS 469
           +G PG  GP  P+     + P   +G PGPA  R                G+  EP +D 
Sbjct: 485 RGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPR----------------GAAGEPGRDG 528

Query: 470 DGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGLSM 529
               P     G RG  PG    GG G++GK   PGS    G P    P    G  G +  
Sbjct: 529 VPGGP-----GMRG-MPGSP--GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGF 580

Query: 530 DG 531
            G
Sbjct: 581 PG 582



 Score = 33.9 bits (76), Expect = 0.51
 Identities = 42/136 (30%), Positives = 50/136 (36%), Gaps = 20/136 (14%)

Query: 414 GPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEP-PKDSDGE 472
           G  G+  P   R +     R G PG A AR ++     GAR    DG    P P  + G 
Sbjct: 291 GENGAPGPMGPRGAPGERGRPGLPGAAGARGND-----GAR--GSDGQPGPPGPPGTAGF 343

Query: 473 DPETAAVGCRGPT--------PGQ----APAGGAGAEGKGLFPGSTLPLGFPYAVSPYFH 520
                A G  GP         PGQ     P G AGA+G    PG     G    + P   
Sbjct: 344 PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI 403

Query: 521 TGAVGGLSMDGEEAPA 536
            GA G +   G   PA
Sbjct: 404 PGAPGLMGARGPPGPA 419



 Score = 33.9 bits (76), Expect = 0.51
 Identities = 32/100 (32%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 412 PQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEP-PKDSD 470
           P GP   G P P   S   + R G PGP+  R              Q G    P PK +D
Sbjct: 542 PGGPGSDGKPGPP-GSQGESGRPGPPGPSGPR-------------GQPGVMGFPGPKGND 587

Query: 471 GEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLG 510
           G   +    G  G    Q P G  G  G    PG T P G
Sbjct: 588 GAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGG 627



 Score = 33.9 bits (76), Expect = 0.51
 Identities = 42/137 (30%), Positives = 53/137 (38%), Gaps = 21/137 (15%)

Query: 414 GPPGS-------GPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPP 466
           GPPGS       GPP PS       PR G PG       +  +    +   + G     P
Sbjct: 552 GPPGSQGESGRPGPPGPS------GPR-GQPGVMGFPGPKGNDGAPGKNGERGGPGGPGP 604

Query: 467 KDSDGEDPETAAVGCRGPT-PG--QAPAGGAGAEGKGLFPGSTLP---LGFPYAVSPYFH 520
           +   G++ ET   G  GPT PG  +   G  G +G    PG+  P    G P    P   
Sbjct: 605 QGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGD 664

Query: 521 TGAVGGLSMDGEEAPAP 537
            GA G     G +A AP
Sbjct: 665 AGAPGAPGGKG-DAGAP 680



 Score = 33.5 bits (75), Expect = 0.67
 Identities = 37/134 (27%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 412  PQGPPG-SGPPTPSRDSARRAPR--KGGPGPASARPSESKEMTGARLWAQDGSEDEPPKD 468
            PQG  G SG P  +  S  R P   +G PG A       ++          GS+  P +D
Sbjct: 973  PQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRD-------GNPGSDGLPGRD 1025

Query: 469  SD----GEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAV 524
                  G+  E  + G  G      P G  G  GK    G + P G   A  P    GA 
Sbjct: 1026 GSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAP 1085

Query: 525  GGLSMDGEEAPAPE 538
            G     G++    E
Sbjct: 1086 GPQGPRGDKGETGE 1099



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 40/141 (28%), Positives = 49/141 (34%), Gaps = 27/141 (19%)

Query: 412 PQGPPGS-GPP-TPSRDSARRAPRK----GGPGPASARPSESKEMTGARLWAQDGSEDEP 465
           PQGP G  GPP  P R+     P +    G PGP     S              G ++  
Sbjct: 104 PQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICES-----------CPTGPQNYS 152

Query: 466 PKDSDGEDPETAAVGCRGPTPGQA-------PAGGAGAEGKGLFPGSTLPLGFPYAVSPY 518
           P+    +     AVG     PG A       P G +G  G    PG   P G P    P 
Sbjct: 153 PQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPS 212

Query: 519 FHTGAVGGLSMDGEEAPAPED 539
              G  G +   G   PA +D
Sbjct: 213 GPPGPPGAI---GPSGPAGKD 230


>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
          Length = 639

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 57/241 (23%), Positives = 75/241 (31%), Gaps = 48/241 (19%)

Query: 219 HGEDPPWHDPPH-------HLPSHDLLRVRQEVAAAALRGPSGLEAHLPSSTAGQRRKQG 271
           +G  PPW  PP        H P H               GP  ++ +L S+  G     G
Sbjct: 418 NGPPPPWMQPPPPPMNQGPHPPGH--------------HGPPPMDQYLGSTPVGS----G 459

Query: 272 LAQHREGAAPAAAPSFSERELPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALCQTPGYG 331
           + +  +G      P       P PPP   P   P   L P  +      P          
Sbjct: 460 VYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPP---------- 509

Query: 332 FLPPAQAEMFARQQELLRKQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEEL 391
             PP  +   A    L  +QN       A          + P     + A   + GA ++
Sbjct: 510 --PPPPSSSMASSTPLPWQQNTTTTTTSAGT-------GSIPPWQQQQAAAAASPGAPQM 560

Query: 392 QRRGALLVLNHGAAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMT 451
           Q    ++ L  G  P   LPP  PP   PP P       AP    P P    PS    M 
Sbjct: 561 QGNPTMVPLPPGVQP--PLPPGAPPPPPPPPPGSAGMMYAPPP--PPPPPMDPSNFVTMM 616

Query: 452 G 452
           G
Sbjct: 617 G 617


>gi|224493912 zinc finger and SCAN domain containing 18 isoform 3
           [Homo sapiens]
          Length = 510

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 70/288 (24%), Positives = 105/288 (36%), Gaps = 35/288 (12%)

Query: 249 LRGPSGLEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLSP------- 301
           L  P+G  + L S    +R    L    E A+P+ A    E   P   P LSP       
Sbjct: 138 LGSPAGSSSIL-SDGVYERHMDPLLLPGELASPSQALGAGEIPAPSETPWLSPDPLFLEQ 196

Query: 302 ---QNAPHVALGP-HLRPPFLGVPSALCQTPGYGFLPPAQAEMFARQQELLRKQNLARLE 357
              + A     GP +        P        +G L PA+  + + ++ LL    L++  
Sbjct: 197 RRVREAKTEEDGPANTEQKLKSFPEDPQHLGEWGHLDPAEENLKSYRKLLLWGYQLSQ-- 254

Query: 358 LPADLLRQKELESARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAPLLALPPQGPPG 417
              D   + + E  R     P+ +  P  G  + +  G        A  L  LP + PPG
Sbjct: 255 --PDAASRLDTEELRLVERDPQGSSLPEGGRRQ-ESAGCACEEAAPAGVLPELPTEAPPG 311

Query: 418 SG---PPTPSRDSARRAPRKGGPGPASARPSESKEMTGA------------RLWAQDGSE 462
                PP+ + +     P K  P P   + +ES   TG+            R  A+ G++
Sbjct: 312 DALADPPSGTTEEEEEQPGKA-PDPQDPQDAESDSATGSQRQSVIQQPAPDRGTAKLGTK 370

Query: 463 DEPPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLG 510
              P+D DG+  E   V   G + G     G GA+  GL  G     G
Sbjct: 371 RPHPEDGDGQSLE--GVSSSGDSAGLEAGQGPGADEPGLSRGKPYACG 416


>gi|226371704 zinc finger and SCAN domain containing 18 isoform 3
           [Homo sapiens]
          Length = 510

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 70/288 (24%), Positives = 105/288 (36%), Gaps = 35/288 (12%)

Query: 249 LRGPSGLEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLSP------- 301
           L  P+G  + L S    +R    L    E A+P+ A    E   P   P LSP       
Sbjct: 138 LGSPAGSSSIL-SDGVYERHMDPLLLPGELASPSQALGAGEIPAPSETPWLSPDPLFLEQ 196

Query: 302 ---QNAPHVALGP-HLRPPFLGVPSALCQTPGYGFLPPAQAEMFARQQELLRKQNLARLE 357
              + A     GP +        P        +G L PA+  + + ++ LL    L++  
Sbjct: 197 RRVREAKTEEDGPANTEQKLKSFPEDPQHLGEWGHLDPAEENLKSYRKLLLWGYQLSQ-- 254

Query: 358 LPADLLRQKELESARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAPLLALPPQGPPG 417
              D   + + E  R     P+ +  P  G  + +  G        A  L  LP + PPG
Sbjct: 255 --PDAASRLDTEELRLVERDPQGSSLPEGGRRQ-ESAGCACEEAAPAGVLPELPTEAPPG 311

Query: 418 SG---PPTPSRDSARRAPRKGGPGPASARPSESKEMTGA------------RLWAQDGSE 462
                PP+ + +     P K  P P   + +ES   TG+            R  A+ G++
Sbjct: 312 DALADPPSGTTEEEEEQPGKA-PDPQDPQDAESDSATGSQRQSVIQQPAPDRGTAKLGTK 370

Query: 463 DEPPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLG 510
              P+D DG+  E   V   G + G     G GA+  GL  G     G
Sbjct: 371 RPHPEDGDGQSLE--GVSSSGDSAGLEAGQGPGADEPGLSRGKPYACG 416


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,100,499
Number of Sequences: 37866
Number of extensions: 2268867
Number of successful extensions: 14754
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 842
Number of HSP's that attempted gapping in prelim test: 10578
Number of HSP's gapped (non-prelim): 3804
length of query: 681
length of database: 18,247,518
effective HSP length: 109
effective length of query: 572
effective length of database: 14,120,124
effective search space: 8076710928
effective search space used: 8076710928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.