Guide to the Human Genome
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Name: SFMBT1 Sequence: fasta or formatted (866aa) NCBI GI: 53692195
Description:

Scm-like with four mbt domains 1

Referenced in:

Additional Genes in Development

Other entries for this name:
alt mRNA [866aa] Scm-like with four mbt domains 1
alt mRNA [866aa] Scm-like with four mbt domains 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         49           2
 C cysteine            3.2         28           2
 D aspartate           5.7         49           3
 E glutamate           8.9         77           5
 F phenylalanine       3.3         29           1
 G glycine             6.0         52           2
 H histidine           2.3         20           2
 I isoleucine          4.4         38           1
 K lysine              6.8         59           3
 L leucine             9.4         81           4
 M methionine          1.3         11           1
 N asparagine          3.5         30           1
 P proline             6.8         59           3
 Q glutamine           4.0         35           2
 R arginine            6.0         52           2
 S serine              7.3         63           3
 T threonine           4.2         36           2
 V valine              6.4         55           2
 W tryptophan          1.8         16           1
 Y tyrosine            3.1         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Scm-like with four mbt domains 1 
SFMBT1                1.000   Scm-like with four mbt domains 1 
SFMBT1                1.000   Scm-like with four mbt domains 1 
SFMBT2                0.525   Scm-like with four mbt domains 2 
L3MBTL2               0.121   l(3)mbt-like 2 
MBTD1                 0.106   mbt domain containing 1 
SCML2                 0.071   sex comb on midleg-like 2 
L3MBTL                0.069   l(3)mbt-like isoform I 
L3MBTL                0.069   l(3)mbt-like isoform II 
L3MBTL3               0.064   l(3)mbt-like 3 isoform b 
L3MBTL3               0.064   l(3)mbt-like 3 isoform a 
SCMH1                 0.062   sex comb on midleg 1 isoform 1 
L3MBTL4               0.062   l(3)mbt-like 4 
SCML4                 0.036   sex comb on midleg-like 4 
SCMH1                 0.036   sex comb on midleg 1 isoform 2 
PHC1                  0.026   polyhomeotic 1-like 
SCML1                 0.025   sex comb on midleg-like 1 isoform a 
SCML1                 0.025   sex comb on midleg-like 1 isoform b 
SCML1                 0.024   sex comb on midleg-like 1 isoform c 
SCML1                 0.024   sex comb on midleg-like 1 isoform c 
PHC2                  0.022   polyhomeotic-like 2 isoform b 
PHC2                  0.022   polyhomeotic-like 2 isoform a 
SAMD7                 0.021   sterile alpha motif domain containing 7 
PHC3                  0.020   polyhomeotic like 3 
SAMD1                 0.020   sterile alpha motif domain containing 1 
SAMD13                0.016   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.016   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.016   sterile alpha motif domain containing 13 isoform 1 [...
CDC2L2                0.014   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.014   cell division cycle 2-like 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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