Guide to the Human Genome
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Name: ZSCAN18 Sequence: fasta or formatted (510aa) NCBI GI: 224493912
Description:

zinc finger and SCAN domain containing 18 isoform 3

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [566aa] zinc finger and SCAN domain containing 18 isoform 1
alt prot [374aa] zinc finger and SCAN domain containing 18 isoform 2
alt mRNA [510aa] zinc finger and SCAN domain containing 18 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         55           2
 C cysteine            1.6          8           1
 D aspartate           4.7         24           1
 E glutamate          11.8         60           5
 F phenylalanine       2.0         10           1
 G glycine             9.6         49           2
 H histidine           2.5         13           2
 I isoleucine          1.0          5           1
 K lysine              3.7         19           2
 L leucine            10.4         53           3
 M methionine          1.2          6           1
 N asparagine          0.4          2           1
 P proline            11.4         58           2
 Q glutamine           5.9         30           2
 R arginine            5.7         29           2
 S serine              8.2         42           3
 T threonine           3.3         17           2
 V valine              2.9         15           2
 W tryptophan          1.4          7           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger and SCAN domain containing 18 isoform 3... 
ZSCAN18               1.000   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               1.000   zinc finger and SCAN domain containing 18 isoform 1...
ZSCAN18               0.729   zinc finger and SCAN domain containing 18 isoform 2...
ZNF446                0.144   zinc finger protein 446 
ZNF263                0.123   zinc finger protein 263 
ZKSCAN3               0.121   zinc finger with KRAB and SCAN domains 3 
ZSCAN22               0.120   zinc finger and SCAN domain containing 22 
MZF1                  0.118   zinc finger protein 42 isoform 2 
MZF1                  0.118   zinc finger protein 42 isoform 1 
ZSCAN1                0.118   zinc finger and SCAN domain containing 1 
PEG3                  0.116   paternally expressed 3 isoform 1 
PEG3                  0.116   paternally expressed 3 isoform 1 
PEG3                  0.116   paternally expressed 3 isoform 1 
ZNF202                0.114   zinc finger protein 202 
ZKSCAN5               0.113   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               0.113   zinc finger with KRAB and SCAN domains 5 
ZNF498                0.110   zinc finger and SCAN domain containing 25 
ZKSCAN1               0.109   zinc finger protein 36 
ZNF18                 0.108   zinc finger protein 18 
ZNF500                0.108   zinc finger protein 500 
ZNF167                0.105   zinc finger protein 167 isoform 1 
ZNF213                0.105   zinc finger protein 213 
ZNF213                0.105   zinc finger protein 213 
ZNF197                0.104   zinc finger protein 197 isoform 1 
ZSCAN21               0.101   zinc finger protein 38 
ZNF215                0.101   zinc finger protein 215 
ZNF449                0.099   zinc finger protein 449 
ZNF274                0.095   zinc finger protein 274 isoform c 
ZNF274                0.095   zinc finger protein 274 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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