Guide to the Human Genome
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Name: PHC2 Sequence: fasta or formatted (323aa) NCBI GI: 37595530
Description:

polyhomeotic-like 2 isoform b

Referenced in:

Stem Cells and Early Development

Other entries for this name:
alt prot [858aa] polyhomeotic-like 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         24           2
 C cysteine            2.2          7           1
 D aspartate           4.3         14           1
 E glutamate           7.4         24           2
 F phenylalanine       3.1         10           1
 G glycine             6.5         21           1
 H histidine           2.8          9           2
 I isoleucine          3.7         12           1
 K lysine              7.7         25           3
 L leucine             9.6         31           4
 M methionine          2.8          9           1
 N asparagine          3.1         10           1
 P proline             6.5         21           2
 Q glutamine           5.3         17           2
 R arginine            5.9         19           3
 S serine              9.9         32           3
 T threonine           5.3         17           4
 V valine              4.0         13           1
 W tryptophan          0.3          1           1
 Y tyrosine            2.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polyhomeotic-like 2 isoform b 
PHC2                  1.000   polyhomeotic-like 2 isoform a 
PHC1                  0.372   polyhomeotic 1-like 
PHC3                  0.353   polyhomeotic like 3 
SAMD7                 0.088   sterile alpha motif domain containing 7 
L3MBTL4               0.079   l(3)mbt-like 4 
L3MBTL3               0.079   l(3)mbt-like 3 isoform b 
L3MBTL3               0.079   l(3)mbt-like 3 isoform a 
SAMD11                0.079   sterile alpha motif domain containing 11 
SCMH1                 0.064   sex comb on midleg 1 isoform 1 
SCMH1                 0.064   sex comb on midleg 1 isoform 2 
SFMBT1                0.062   Scm-like with four mbt domains 1 
SFMBT1                0.062   Scm-like with four mbt domains 1 
SFMBT1                0.062   Scm-like with four mbt domains 1 
SFMBT2                0.058   Scm-like with four mbt domains 2 
SCML2                 0.056   sex comb on midleg-like 2 
SAMD1                 0.056   sterile alpha motif domain containing 1 
SAMD13                0.056   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.056   sterile alpha motif domain containing 13 isoform 2 ...
SAMD13                0.056   sterile alpha motif domain containing 13 isoform 1 [...
SCML4                 0.054   sex comb on midleg-like 4 
SCML1                 0.038   sex comb on midleg-like 1 isoform a 
SCML1                 0.038   sex comb on midleg-like 1 isoform c 
SCML1                 0.038   sex comb on midleg-like 1 isoform c 
SCML1                 0.038   sex comb on midleg-like 1 isoform b 
SARM1                 0.022   sterile alpha and TIR motif containing 1 
SAMD9                 0.022   sterile alpha motif domain containing 9 
NKTR                  0.016   natural killer-tumor recognition sequence 
MBTD1                 0.013   mbt domain containing 1 
L3MBTL2               0.013   l(3)mbt-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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