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Search of human proteins with 14110407
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14110407 heterogeneous nuclear ribonucleoprotein D-like
[Homo sapiens]
(420 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 867 0.0
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 411 e-115
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 399 e-111
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 381 e-106
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 321 9e-88
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 309 3e-84
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 304 9e-83
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 198 9e-51
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 197 2e-50
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 196 3e-50
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 196 3e-50
gi|20373175 musashi 2 isoform a [Homo sapiens] 194 1e-49
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 194 2e-49
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 194 2e-49
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 192 5e-49
gi|25121993 musashi 2 isoform b [Homo sapiens] 178 7e-45
gi|4505255 musashi 1 [Homo sapiens] 171 1e-42
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 171 1e-42
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 162 5e-40
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 162 5e-40
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 160 2e-39
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 145 5e-35
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 145 5e-35
gi|6678271 TAR DNA binding protein [Homo sapiens] 119 4e-27
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 87 3e-17
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 83 5e-16
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 83 5e-16
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 83 5e-16
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 76 7e-14
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 75 9e-14
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 867 bits (2241), Expect = 0.0
Identities = 420/420 (100%), Positives = 420/420 (100%)
Query: 1 MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGARRAQRH 60
MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGARRAQRH
Sbjct: 1 MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGARRAQRH 60
Query: 61 VTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTM 120
VTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTM
Sbjct: 61 VTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTM 120
Query: 121 EDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK 180
EDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK
Sbjct: 121 EDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK 180
Query: 181 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGL 240
TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGL
Sbjct: 181 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGL 240
Query: 241 SPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS 300
SPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS
Sbjct: 241 SPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS 300
Query: 301 GKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGN 360
GKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGN
Sbjct: 301 GKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGN 360
Query: 361 YNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
YNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY
Sbjct: 361 YNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 411 bits (1056), Expect = e-115
Identities = 199/288 (69%), Positives = 235/288 (81%), Gaps = 14/288 (4%)
Query: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
+EG+KI+ASKN++D+GKMFIGGLSWDT+KKDL +Y S+FGEVVDCT+K DP+TGRSRGFG
Sbjct: 63 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
Query: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
FVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP KK+FVGGLSPDT EE+I+EY
Sbjct: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
Query: 253 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
FG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E +YH +G KCEIKVA KE
Sbjct: 183 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
Query: 313 VYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS 372
Y QQQQQ G RG G G RGRG G QNWNQG++NY++QGYGNY Q Y
Sbjct: 243 QY--QQQQQWGSRG---GFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGY---NSQGYG 294
Query: 373 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
GYGGYDYTGYN NY GY DYS QQS YGK SR GG HQN+Y+PY
Sbjct: 295 GYGGYDYTGYN--NY---YGYGDYSNQQSGYGKVSRRGG-HQNSYKPY 336
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 122 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 181
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 213
D T + RGF F+ FK+ V K++E K H +
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 228
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 399 bits (1026), Expect = e-111
Identities = 199/307 (64%), Positives = 235/307 (76%), Gaps = 33/307 (10%)
Query: 133 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 173
+EG+KI+ASKN++D+G KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 63 SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 174 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 233
VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
Query: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNY 353
+YH +G KCEIKVA KE Y QQQQQ G RG G G RGRG G QNWNQG++NY
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQY--QQQQQWGSRG---GFAGRARGRGGGPSQNWNQGYSNY 297
Query: 354 YDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNH 413
++QGYGNY Q Y GYGGYDYTGYN NY GY DYS QQS YGK SR GG H
Sbjct: 298 WNQGYGNYGY---NSQGYGGYGGYDYTGYN--NY---YGYGDYSNQQSGYGKVSRRGG-H 348
Query: 414 QNNYQPY 420
QN+Y+PY
Sbjct: 349 QNSYKPY 355
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 122 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 181
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 213
D T + RGF F+ FK+ V K++E K H +
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 381 bits (979), Expect = e-106
Identities = 192/290 (66%), Positives = 229/290 (78%), Gaps = 14/290 (4%)
Query: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 55 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 114
Query: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
F+LFKDAASV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 115 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 173
Query: 253 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
FG FGEIE IELPMD K N+RRGF FIT+ +EEPVKK+LE ++H + KCEIKVAQPKE
Sbjct: 174 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 233
Query: 313 VYRQQQQQQKGGRG-AAAGGRG-GTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQN 370
VY QQQQ GGRG G RG G G G GQ Q+WNQG+ NY++QGYG Y YG
Sbjct: 234 VY-QQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYG-YQQGYG---- 287
Query: 371 YSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
GYGGYDY+ Y Y YGYG GY DYS + YGK+ R GG HQNNY+PY
Sbjct: 288 -PGYGGYDYSPYGY--YGYGPGY-DYSQGSTNYGKSQRRGG-HQNNYKPY 332
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 321 bits (822), Expect = 9e-88
Identities = 165/288 (57%), Positives = 199/288 (69%), Gaps = 63/288 (21%)
Query: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
+EG+KI+ASKN++D+GKMFIGGLSWDT+KKDL +Y S+FGEVVDCT+K DP+TGRSRGFG
Sbjct: 63 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
Query: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
FVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP KK+FVGGLSPDT EE+I+EY
Sbjct: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
Query: 253 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
FG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E +YH +G KCEIKVA KE
Sbjct: 183 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
Query: 313 VYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS 372
Y+QQQQ G RGG GR RG+G GDQ
Sbjct: 243 QYQQQQQW---------GSRGGFAGRARGRG-----------------------GDQ--- 267
Query: 373 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
QS YGK SR GG HQN+Y+PY
Sbjct: 268 ---------------------------QSGYGKVSRRGG-HQNSYKPY 287
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 122 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 181
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
Query: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 213
D T + RGF F+ FK+ V K++E K H +
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 228
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 309 bits (792), Expect = 3e-84
Identities = 165/307 (53%), Positives = 199/307 (64%), Gaps = 82/307 (26%)
Query: 133 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 173
+EG+KI+ASKN++D+G KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 63 SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 174 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 233
VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
Query: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNY 353
+YH +G KCEIKVA KE Y+QQQQ G RGG GR RG+G
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQW---------GSRGGFAGRARGRG---------- 283
Query: 354 YDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNH 413
GDQ QS YGK SR GG H
Sbjct: 284 -------------GDQ------------------------------QSGYGKVSRRGG-H 299
Query: 414 QNNYQPY 420
QN+Y+PY
Sbjct: 300 QNSYKPY 306
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 122 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 181
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
Query: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 213
D T + RGF F+ FK+ V K++E K H +
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 304 bits (779), Expect = 9e-83
Identities = 152/242 (62%), Positives = 182/242 (75%), Gaps = 11/242 (4%)
Query: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
AEG +INASKN++D GKMF+GGLSWDTSKKDL +Y ++FGEVVDCTIK DP TGRSRGFG
Sbjct: 55 AEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 114
Query: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
F+LFKDAASV+KVL+ KEH+LDG++IDPK+A A+K K+P KK+FVGGL+P+ +EE+I+EY
Sbjct: 115 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREY 173
Query: 253 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
FG FGEIE IELPMD K N+RRGF FIT+ +EEPVKK+LE ++H + KCEIKVAQPKE
Sbjct: 174 FGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 233
Query: 313 VYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS 372
VY QQQQ GGRG G G+ G G G GQ YG G NY
Sbjct: 234 VY-QQQQYGSGGRGNRNRGNRGSGGGGGGGGQG---------STNYGKSQRRGGHQNNYK 283
Query: 373 GY 374
Y
Sbjct: 284 PY 285
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 198 bits (503), Expect = 9e-51
Identities = 112/317 (35%), Positives = 166/317 (52%), Gaps = 34/317 (10%)
Query: 135 GSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 194
G + + K + K+FIGGLS++T+ L E+ ++G + DC + DP T RSRGFGFV
Sbjct: 22 GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81
Query: 195 LFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQ 248
+ VD + + HK+DG++++PKRA + + P KK+FVGG+ DT E
Sbjct: 82 TYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 249 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
+++YF +G+IE IE+ D ++ ++RGF F+T+ D + V K++ +YH I CE+K A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 309 QPK-EVYRQQQQQQKG--------------------GRGAAAGGRGGTRGRGRGQGQNWN 347
K E+ Q+ +G GRG GGRGG G G G ++
Sbjct: 202 LSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 348 QGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGN----YGYGQGYADYSGQQSTY 403
G Y G+G YGG YS GGY G YGN YG G GY Y+ + +
Sbjct: 262 GGDGGY--NGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYN-EGGNF 318
Query: 404 GKASRGGGNHQNNYQPY 420
G + GGG + N++ Y
Sbjct: 319 GGGNYGGGGNYNDFGNY 335
Score = 38.5 bits (88), Expect = 0.012
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 321 QKGGRGAAAG----GRGGTRGRGR-GQGQNWNQGFNNYYDQGYGNY----NSAYGGDQNY 371
Q GG G G GG G G G G N+N F NY Q NY ++GG +
Sbjct: 299 QGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYND-FGNYSGQQQSNYGPMKGGSFGGRSSG 357
Query: 372 SGYGGYDYTGYNYGNYG 388
S YGG +G G YG
Sbjct: 358 SPYGGGYGSGGGSGGYG 374
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 197 bits (500), Expect = 2e-50
Identities = 107/298 (35%), Positives = 164/298 (55%), Gaps = 17/298 (5%)
Query: 129 IEEFAEGSKINASKNQQDD-GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGR 187
+E+ E + K +++ K+FIGGLS++T+++ L Y ++G++ DC + DP + R
Sbjct: 1 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 60
Query: 188 SRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLS 241
SRGFGFV F A VD + + H +DG++++PKRA A + P KK+FVGG+
Sbjct: 61 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 120
Query: 242 PDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSG 301
DT E +++YF +G+I+ IE+ D ++ ++RGF F+T+ D +PV K++ +YH I
Sbjct: 121 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH 180
Query: 302 KCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRG--RGQGQNWNQGFNNYYDQGYG 359
E++ K + RQ+ Q+ + R GRGG G G RG G N+ G + + G
Sbjct: 181 NAEVR----KALSRQEMQEVQSSR----SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSD 232
Query: 360 NYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNY 417
Y S G Y+GYGG G G+ GYG G Y G YG G G +NY
Sbjct: 233 GYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNY 290
Score = 43.9 bits (102), Expect = 3e-04
Identities = 32/92 (34%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 323 GGRGAAAGGRGGTRGRGRGQGQNW------NQGFNNYYDQGYGNYNSAYGGDQNYSGYGG 376
GGRG GG G +G G G + N G NY D G N + G +GG
Sbjct: 264 GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGG 323
Query: 377 YDYTGYNYGNYGYGQGYADYSGQQSTYGKASR 408
G YG YG G SG YG SR
Sbjct: 324 SRNMGGPYGGGNYGPG---GSGGSGGYGGRSR 352
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 196 bits (499), Expect = 3e-50
Identities = 104/277 (37%), Positives = 155/277 (55%), Gaps = 16/277 (5%)
Query: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
K+FIGGLS++T+++ L Y ++G++ DC + DP + RSRGFGFV F A VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 209 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262
+ H +DG++++PKRA A + P KK+FVGG+ DT E +++YF +G+I+ I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQK 322
E+ D ++ ++RGF F+T+ D +PV K++ +YH I E++ K + RQ+ Q+ +
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR----KALSRQEMQEVQ 185
Query: 323 GGRGAAAGGRGGTRGRG--RGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYT 380
R GRGG G G RG G N+ G + + G Y S G Y+GYGG
Sbjct: 186 SSR----SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGG 241
Query: 381 GYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNY 417
G G+ GYG G Y G YG G G +NY
Sbjct: 242 GNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNY 278
Score = 55.1 bits (131), Expect = 1e-07
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 229 KEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVK 288
KE +K+F+GGLS +T+EE ++ Y+ +G++ + + D + RGF F+T++ V
Sbjct: 5 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
Query: 289 KLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
+ +R H I +V +PK +++ + G
Sbjct: 65 AAMAARPHSIDG-----RVVEPKRAVAREESGKPG 94
Score = 43.9 bits (102), Expect = 3e-04
Identities = 32/92 (34%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 323 GGRGAAAGGRGGTRGRGRGQGQNW------NQGFNNYYDQGYGNYNSAYGGDQNYSGYGG 376
GGRG GG G +G G G + N G NY D G N + G +GG
Sbjct: 252 GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGG 311
Query: 377 YDYTGYNYGNYGYGQGYADYSGQQSTYGKASR 408
G YG YG G SG YG SR
Sbjct: 312 SRNMGGPYGGGNYGPG---GSGGSGGYGGRSR 340
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 196 bits (498), Expect = 3e-50
Identities = 106/290 (36%), Positives = 161/290 (55%), Gaps = 18/290 (6%)
Query: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
SK + K + K+FIGGLS++T+ + L + ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
+ VD + + HK+DG++++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + CE++ A
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
K+ Q+G G +G GG RG G G N+ +G N+ +G +GG +
Sbjct: 182 SKQEMASASSSQRGRSG--SGNFGGGRGGGFGGNDNFGRG-GNFSGRG------GFGGSR 232
Query: 370 NYSGYGGYDYTGYN-YGN-YGYGQGYADYSGQQSTYGKASRGGGNHQNNY 417
GYGG GYN +GN GYG G YSG YG +G GN + Y
Sbjct: 233 GGGGYGG-SGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGY 281
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 194 bits (493), Expect = 1e-49
Identities = 118/294 (40%), Positives = 156/294 (53%), Gaps = 25/294 (8%)
Query: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
++G+ +A+ +Q D GKMFIGGLSW TS L +Y S+FGE+ +C + DP T RSRGFG
Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
Query: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQ 248
FV F D ASVDKVL H+LD K IDPK R K KK+FVGGLS +T E
Sbjct: 66 FVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVED 125
Query: 249 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
+K+YF FG++E+ L D TN RGF F+T+ +E+ V+K+ E +H+I + E K A
Sbjct: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Query: 309 QPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGD 368
QPKEV GTRGR RG + GY N+ + YG
Sbjct: 186 QPKEVMFPP----------------GTRGRARGLPYTMDAFMLGMGMLGYPNFVATYG-- 227
Query: 369 QNYSGYG---GYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQP 419
+ Y G+ GY + G+ YG A + + S A GG N+ P
Sbjct: 228 RGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGP 281
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 194 bits (492), Expect = 2e-49
Identities = 101/290 (34%), Positives = 156/290 (53%), Gaps = 10/290 (3%)
Query: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
SK + K + K+FIGGLS++T+ + L + ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
+ VD + HK+DG++++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + CE++ A
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
Query: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
PK+ Q+G RG +G GG RG G G N+ +G N G+G G
Sbjct: 182 PKQEMASASSSQRGRRG--SGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG 239
Query: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYG--KASRGGGNHQNNY 417
+ GY G+ G N+G G + +Y+ Q S +G K GG Y
Sbjct: 240 SGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 194 bits (492), Expect = 2e-49
Identities = 101/290 (34%), Positives = 156/290 (53%), Gaps = 10/290 (3%)
Query: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
SK + K + K+FIGGLS++T+ + L + ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
+ VD + HK+DG++++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + CE++ A
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
Query: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
PK+ Q+G RG +G GG RG G G N+ +G N G+G G
Sbjct: 182 PKQEMASASSSQRGRRG--SGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG 239
Query: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYG--KASRGGGNHQNNY 417
+ GY G+ G N+G G + +Y+ Q S +G K GG Y
Sbjct: 240 SGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 192 bits (488), Expect = 5e-49
Identities = 99/290 (34%), Positives = 155/290 (53%), Gaps = 10/290 (3%)
Query: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
SK + K + K+FIGGLS++T+ + L + ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
+ VD + + HK+DG++++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + CE++ A
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
K+ Q+G G +G GG RG G G N+ +G N G+G G
Sbjct: 182 SKQEMASASSSQRGRSG--SGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
Query: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYG--KASRGGGNHQNNY 417
+ GY G+ G N+G G + +Y+ Q S +G K GG Y
Sbjct: 240 SGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 178 bits (452), Expect = 7e-45
Identities = 104/241 (43%), Positives = 132/241 (54%), Gaps = 25/241 (10%)
Query: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
KMFIGGLSW TS L +Y S+FGE+ +C + DP T RSRGFGFV F D ASVDKVL
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 209 KEHKLDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 264
H+LD K IDPK R K KK+FVGGLS +T E +K+YF FG++E+ L
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
Query: 265 PMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGG 324
D TN RGF F+T+ +E+ V+K+ E +H+I + E K AQPKEV
Sbjct: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP------- 190
Query: 325 RGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG---GYDYTG 381
GTRGR RG + GY N+ + YG + Y G+ GY +
Sbjct: 191 ---------GTRGRARGLPYTMDAFMLGMGMLGYPNFVATYG--RGYPGFAPSYGYQFPD 239
Query: 382 Y 382
Y
Sbjct: 240 Y 240
Score = 67.8 bits (164), Expect = 2e-11
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 231 PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
P K+F+GGLS TS + +++YF FGEI + D T RGF F+T+ D V K+
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 291 LESRYHQIGSGKCEIKV-----AQPKEVYRQQQ 318
L +H++ S + KV AQPK V R ++
Sbjct: 75 LGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKK 107
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 171 bits (432), Expect = 1e-42
Identities = 98/239 (41%), Positives = 129/239 (53%), Gaps = 20/239 (8%)
Query: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
D KMFIGGLSW T+++ L EY +FGEV +C + DP+T RSRGFGFV F D A VDKV
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 206 LELKEHKLDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIEN 261
L H+LD K IDPK R K KK+FVGGLS +T+ E +K+YF FG++++
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Query: 262 IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQ 321
L D TN RGF F+T+ E+ V+K+ E +H+I + E K AQPKEV
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV-------- 189
Query: 322 KGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG-GYDY 379
G RGR R + GY + + ++Y+G GY Y
Sbjct: 190 -------MSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTY 241
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 171 bits (432), Expect = 1e-42
Identities = 103/279 (36%), Positives = 147/279 (52%), Gaps = 29/279 (10%)
Query: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
K+FIGGL+ TS+ L + FG + DC + +P T RSR FGFV + + D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 209 KEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262
H +DG ++ KRA + + P KK+FVGGL D +E + E+F FG +E
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE-VYRQQQQQQ 321
E+ D ++ ++RGF F+ + + + K ++H I + E+K A PKE +Y
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIY------S 181
Query: 322 KGGRGAAAGGRGGTRGRGRGQGQNWN-------QGFNNY--YDQGYGNYNSAYGGDQNYS 372
GG G + RGG GRGRG G++ N G+N+Y Y G G +AYGG
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGG----- 236
Query: 373 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGG 411
G GG Y G +YGN G+G G+ YS QS+YG GGG
Sbjct: 237 GGGGSSYGGSDYGN-GFG-GFGSYSQHQSSYGPMKSGGG 273
Score = 65.9 bits (159), Expect = 7e-11
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
Query: 93 SSIQRSAAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFI 152
S+++ + AA AA+ P A T+E S + G+ K +F+
Sbjct: 56 SNVEEADAAMAAS------PHAVDGNTVELKRAVSREDSARPGAHAKVKK-------LFV 102
Query: 153 GGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHK 212
GGL D ++ DL E+ S+FG V I D +G+ RGFGFV F++ + DK +K H
Sbjct: 103 GGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHP 162
Query: 213 LDGKLIDPKRAKALKGKEPPKKVFVGG 239
+ G ++ K+A P + ++ GG
Sbjct: 163 IQGHRVEVKKA------VPKEDIYSGG 183
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 162 bits (410), Expect = 5e-40
Identities = 87/283 (30%), Positives = 146/283 (51%), Gaps = 15/283 (5%)
Query: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
SK + K + K+FIGGL ++TS + L + ++G + +C + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
+ VD + + HK+ G++++PK A + + + P KK+FVGG+ DT E +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
++Y+ +G+ E IE+ D + ++R F F+T+ + + K++ +YH + CE++ A
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
K+ Q+ G +G GG RG G N+ G N G G + ++GG
Sbjct: 182 SKQKMASAPSSQRSRSG--SGNFGGGRGGGFSGNDNFGHGGN---FSGCGGFGGSHGGSA 236
Query: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGN 412
+ GY G+ G N+G + + + Q S +G GGN
Sbjct: 237 D--GYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMK--GGN 275
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 162 bits (410), Expect = 5e-40
Identities = 87/283 (30%), Positives = 146/283 (51%), Gaps = 15/283 (5%)
Query: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
SK + K + K+FIGGL ++TS + L + ++G + +C + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
+ VD + + HK+ G++++PK A + + + P KK+FVGG+ DT E +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
++Y+ +G+ E IE+ D + ++R F F+T+ + + K++ +YH + CE++ A
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
K+ Q+ G +G GG RG G N+ G N G G + ++GG
Sbjct: 182 SKQKMASAPSSQRSRSG--SGNFGGGRGGGFSGNDNFGHGGN---FSGCGGFGGSHGGSA 236
Query: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGN 412
+ GY G+ G N+G + + + Q S +G GGN
Sbjct: 237 D--GYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMK--GGN 275
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 160 bits (406), Expect = 2e-39
Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 15/283 (5%)
Query: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
SK + K + K+FIGGL ++TS + L + ++G + +C + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
+ VD + + HK+ G++++PK A + + + P KK+FVGG+ DT E +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
++Y+ +G+ E IE+ D + ++R F F+T+ + + K++ +YH + CE++ A
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
K+ Q+ G +G GG RG G N+ G N G G ++GG
Sbjct: 182 SKQKMASAPSSQRSRSG--SGNFGGGRGGGFSGNDNFGHGGN---FSGCGGLGGSHGGSA 236
Query: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGN 412
+ GY G+ G N+G + + + Q S +G GGN
Sbjct: 237 D--GYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMK--GGN 275
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 145 bits (367), Expect = 5e-35
Identities = 87/247 (35%), Positives = 120/247 (48%), Gaps = 28/247 (11%)
Query: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
GK+F+GGL W T+++ L Y S++GEVVDC I D T +SRGFGFV FKD V VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 208 LKEHKLDGKLIDPKRAKALKGKEPPK-------------------KVFVGGLSPDTSEEQ 248
+ H LDG+ IDPK +G +P + K+FVGG+ + E +
Sbjct: 70 SRPHTLDGRNIDPKPCTP-RGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETE 128
Query: 249 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
++EYF FG + + + D + RGF FIT+ DE+ V + + +H I K E+K A
Sbjct: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
Query: 309 QPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGD 368
+P R + Q G GA+ G G W + QGYG
Sbjct: 189 EP----RDSKSQAPGQPGASQWGSRVVPNAANG----WAGQPPPTWQQGYGPQGMWVPAG 240
Query: 369 QNYSGYG 375
Q GYG
Sbjct: 241 QAIGGYG 247
Score = 63.9 bits (154), Expect = 3e-10
Identities = 31/96 (32%), Positives = 51/96 (53%)
Query: 134 EGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193
EG + + K+F+GG+ + + +L EY +FG V + + D R RGFGF
Sbjct: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGK 229
+ F+D SVD+ + + H + GK ++ KRA+ K
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 60.1 bits (144), Expect = 4e-09
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 228 GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 287
G + K+FVGGL T++E ++ YF +GE+ + + D TN+ RGF F+ + D V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 288 KKLLESRYHQIGSGKCEIKVAQPK----EVYRQQQQQQKGGR 325
+L SR H + + K P+ E R ++ QKG R
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 145 bits (367), Expect = 5e-35
Identities = 87/247 (35%), Positives = 120/247 (48%), Gaps = 28/247 (11%)
Query: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
GK+F+GGL W T+++ L Y S++GEVVDC I D T +SRGFGFV FKD V VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 208 LKEHKLDGKLIDPKRAKALKGKEPPK-------------------KVFVGGLSPDTSEEQ 248
+ H LDG+ IDPK +G +P + K+FVGG+ + E +
Sbjct: 70 SRPHTLDGRNIDPKPCTP-RGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETE 128
Query: 249 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
++EYF FG + + + D + RGF FIT+ DE+ V + + +H I K E+K A
Sbjct: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
Query: 309 QPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGD 368
+P R + Q G GA+ G G W + QGYG
Sbjct: 189 EP----RDSKSQAPGQPGASQWGSRVVPNAANG----WAGQPPPTWQQGYGPQGMWVPAG 240
Query: 369 QNYSGYG 375
Q GYG
Sbjct: 241 QAIGGYG 247
Score = 63.9 bits (154), Expect = 3e-10
Identities = 31/96 (32%), Positives = 51/96 (53%)
Query: 134 EGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193
EG + + K+F+GG+ + + +L EY +FG V + + D R RGFGF
Sbjct: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGK 229
+ F+D SVD+ + + H + GK ++ KRA+ K
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 60.1 bits (144), Expect = 4e-09
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 228 GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 287
G + K+FVGGL T++E ++ YF +GE+ + + D TN+ RGF F+ + D V
Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 288 KKLLESRYHQIGSGKCEIKVAQPK----EVYRQQQQQQKGGR 325
+L SR H + + K P+ E R ++ QKG R
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 30.4 bits (67), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 379 YTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 410
Y GY G+GQG++D S Q +YG S G
Sbjct: 349 YAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPG 380
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 119 bits (299), Expect = 4e-27
Identities = 93/317 (29%), Positives = 147/317 (46%), Gaps = 44/317 (13%)
Query: 129 IEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRS 188
++E S + + Q + + GL W T+++DL EY S FGEV+ +K D TG S
Sbjct: 85 MDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHS 144
Query: 189 RGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP---KKVFVGGLSPDTS 245
+GFGFV F + + KV+ + H +DG+ D K + + ++ P +KVFVG + D +
Sbjct: 145 KGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMT 203
Query: 246 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEI 305
E++++E+F +G++ ++ +P R F F+T+ D++ + L I I
Sbjct: 204 EDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDL-IIKGISVHI 257
Query: 306 KVAQPKEVYRQQQQQQKGGR-GAAAGGRGGTRG----RGRGQGQNWNQGFNNYYDQGYGN 360
A+PK + +Q ++ GR G GG G G RG G G NQG N +G
Sbjct: 258 SNAEPK--HNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGA 315
Query: 361 YN--------------SAYG------GDQNYSGYGGYDYTGYNY---GNYGYGQGYADYS 397
++ S++G QN SG G + N N +G G YS
Sbjct: 316 FSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYS 375
Query: 398 GQQS----TYGKASRGG 410
G S +G AS G
Sbjct: 376 GSNSGAAIGWGSASNAG 392
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 87.0 bits (214), Expect = 3e-17
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 26/187 (13%)
Query: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
K+FVGGLS DT+E+ +++ F +G+I + + D +T RGF F+T+ + + K + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNY 353
+ G+ +I+V Q + + +G RG +AGGRG RG GRG+G+ +++G
Sbjct: 67 MNGKSVDGR-QIRVDQ---AGKSSDNRSRGYRGGSAGGRGFFRG-GRGRGRGFSRGGG-- 119
Query: 354 YDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNH 413
D+G YGG++ S GGY + Y + GY+D S GG++
Sbjct: 120 -DRG-------YGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRS-----------SGGSY 160
Query: 414 QNNYQPY 420
+++Y Y
Sbjct: 161 RDSYDSY 167
Score = 62.4 bits (150), Expect = 7e-10
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASV-DK 204
D+GK+F+GGLS+DT+++ L + S++G++ + + D T RSRGFGFV F++ D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 205 VLELKEHKLDGKLI 218
++ + +DG+ I
Sbjct: 64 MMAMNGKSVDGRQI 77
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 82.8 bits (203), Expect = 5e-16
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 12/166 (7%)
Query: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 198
N + ++D +F L+ +DL E+ S G+V D + +D + RS+G +V F D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 199 AASVDKVLELKEHKLDGKLI-------DPKRAKAL-----KGKEPPKKVFVGGLSPDTSE 246
+SV + L ++ G I + RA A+ KG P +++VG L + +E
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
+ ++ F FG IE+I+L MD++T +G+ FIT++D E KK LE
Sbjct: 264 DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 82.8 bits (203), Expect = 5e-16
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 12/166 (7%)
Query: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKD 198
N + ++D +F L+ +DL E+ S G+V D + +D + RS+G +V F D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 199 AASVDKVLELKEHKLDGKLI-------DPKRAKAL-----KGKEPPKKVFVGGLSPDTSE 246
+SV + L ++ G I + RA A+ KG P +++VG L + +E
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
+ ++ F FG IE+I+L MD++T +G+ FIT++D E KK LE
Sbjct: 264 DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 82.8 bits (203), Expect = 5e-16
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
K+FVGGL+ +T E+ ++++F +FG I + + D +T RGF FIT+T+ E + +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNY 353
+ G+ +I+V + +G RG G G R RG G G Y
Sbjct: 67 MNGESLDGR-QIRV-------DHAGKSARGTRGGGFGAHGRGRSYSRGGGDQ-GYGSGRY 117
Query: 354 YDQGYGNYNSAYGGDQNYSG--YGGYD-YTGYNY 384
YD G Y YG ++Y+G GGYD Y+G NY
Sbjct: 118 YDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNY 151
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
++GK+F+GGL+++T ++ L ++ S FG + + + D T RSRGFGF+ F +
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 206 LE-LKEHKLDGKLI 218
+ + LDG+ I
Sbjct: 64 MRAMNGESLDGRQI 77
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 75.9 bits (185), Expect = 7e-14
Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 32/262 (12%)
Query: 48 SSARQGARRAQRHVTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRT 107
S +R R +R+ ++ P R R R RRH S RS R
Sbjct: 76 SRSRDRDRYRRRNSRSRSPGRQC--------RHRSRSWDRRHGSES---RSRDHRREDRV 124
Query: 108 ARQHPPADSSVTMEDMNEYSNIEEFAEGSKI-----NASKNQQDDGKMFIGGLSWDTSKK 162
+ PP + +S F E S + N S ++D +F L+ +
Sbjct: 125 HYRSPPLATGYRYG----HSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPR 180
Query: 163 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR 222
DL ++ S G+V D I +D + RS+G +V F + SV + L +L G I +
Sbjct: 181 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 240
Query: 223 AKA------------LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKT 270
++A KG P +++VG L + +E+ ++ F FG+I+NI L D+ T
Sbjct: 241 SQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT 300
Query: 271 NERRGFCFITYTDEEPVKKLLE 292
+G+ FIT++D E ++ LE
Sbjct: 301 GRSKGYGFITFSDSECARRALE 322
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 75.5 bits (184), Expect = 9e-14
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 25/230 (10%)
Query: 76 KGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEG 135
+ R R P RH +S S R + + +R R+ ED Y + A G
Sbjct: 71 RNSRSRSPGRQCRH-RSRSWDRRHGSESRSRDHRR----------EDRVHYRS-PPLATG 118
Query: 136 SKI-NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV 194
+ N S ++D +F L+ +DL ++ S G+V D I +D + RS+G +V
Sbjct: 119 EPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 178
Query: 195 LFKDAASVDKVLELKEHKLDGKLIDPKRAKA------------LKGKEPPKKVFVGGLSP 242
F + SV + L +L G I + ++A KG P +++VG L
Sbjct: 179 EFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHF 238
Query: 243 DTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
+ +E+ ++ F FG+I+NI L D+ T +G+ FIT++D E ++ LE
Sbjct: 239 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,549,639
Number of Sequences: 37866
Number of extensions: 977594
Number of successful extensions: 7948
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 4845
Number of HSP's gapped (non-prelim): 1819
length of query: 420
length of database: 18,247,518
effective HSP length: 105
effective length of query: 315
effective length of database: 14,271,588
effective search space: 4495550220
effective search space used: 4495550220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.