Guide to the Human Genome
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Name: C10orf28 Sequence: fasta or formatted (778aa) NCBI GI: 140560994
Description:

growth inhibition and differentiation related protein 86

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         48           2
 C cysteine            2.2         17           1
 D aspartate           7.3         57           2
 E glutamate          10.0         78           3
 F phenylalanine       3.6         28           1
 G glycine             5.3         41           2
 H histidine           2.3         18           1
 I isoleucine          5.0         39           1
 K lysine              6.4         50           2
 L leucine             6.4         50           2
 M methionine          2.1         16           2
 N asparagine          3.1         24           1
 P proline             4.6         36           2
 Q glutamine           3.7         29           3
 R arginine            5.8         45           2
 S serine             10.9         85           3
 T threonine           7.2         56           3
 V valine              6.2         48           2
 W tryptophan          0.4          3           1
 Y tyrosine            1.3         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth inhibition and differentiation related prote... 
R3HCC1                0.069   R3H domain and coiled-coil containing 1 
DSPP                  0.016   dentin sialophosphoprotein preproprotein 
PARN                  0.009   poly(A)-specific ribonuclease (deadenylation nuclea...
PARN                  0.009   poly(A)-specific ribonuclease (deadenylation nuclease...
MUC3A                 0.009   PREDICTED: mucin 3A, cell surface associated, parti...
SAFB2                 0.007   scaffold attachment factor B2 
GPNMB                 0.006   glycoprotein (transmembrane) nmb isoform a precursor...
GPNMB                 0.006   glycoprotein (transmembrane) nmb isoform b precursor ...
BAZ2A                 0.006   bromodomain adjacent to zinc finger domain, 2A [Homo...
C9orf43               0.006   hypothetical protein LOC257169 
EIF3A                 0.005   eukaryotic translation initiation factor 3, subunit 1...
RNF20                 0.005   ring finger protein 20 
WDR44                 0.005   WD repeat domain 44 protein 
AP3D1                 0.005   adaptor-related protein complex 3, delta 1 subunit ...
TNNT2                 0.005   troponin T type 2, cardiac isoform 3 
TNNT2                 0.005   troponin T type 2, cardiac isoform 1 
LOC100133408          0.005   PREDICTED: similar to mucin 
MUC4                  0.005   mucin 4 isoform a 
ANKRD11               0.005   ankyrin repeat domain 11 
SON                   0.005   SON DNA-binding protein isoform F 
SON                   0.005   SON DNA-binding protein isoform B 
TRDN                  0.005   triadin 
MAP7D1                0.005   MAP7 domain containing 1 
SYCP1                 0.005   synaptonemal complex protein 1 
MYH7B                 0.005   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
DMP1                  0.005   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.005   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
TNIK                  0.005   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.005   TRAF2 and NCK interacting kinase isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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