Guide to the Human Genome
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Name: WDR44 Sequence: fasta or formatted (913aa) NCBI GI: 45238858
Description:

WD repeat domain 44 protein

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         54           2
 C cysteine            1.1         10           2
 D aspartate           7.8         71           2
 E glutamate           7.9         72           2
 F phenylalanine       3.4         31           1
 G glycine             5.6         51           3
 H histidine           2.0         18           1
 I isoleucine          4.1         37           2
 K lysine              8.1         74           2
 L leucine             7.9         72           2
 M methionine          1.5         14           1
 N asparagine          3.9         36           2
 P proline             6.4         58           4
 Q glutamine           3.4         31           1
 R arginine            4.5         41           2
 S serine              9.9         90           3
 T threonine           6.9         63           2
 V valine              6.5         59           2
 W tryptophan          0.9          8           1
 Y tyrosine            2.5         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 44 protein 
AHI1                  0.037   Abelson helper integration site 1 isoform b 
AHI1                  0.037   Abelson helper integration site 1 isoform a 
AHI1                  0.037   Abelson helper integration site 1 isoform a 
AHI1                  0.037   Abelson helper integration site 1 isoform a 
WDR5                  0.034   WD repeat domain 5 
WDR5                  0.034   WD repeat domain 5 
WDR51A                0.028   WD repeat domain 51A isoform 2 
WDR51A                0.028   WD repeat domain 51A isoform 1 
SNRNP40               0.028   WD repeat domain 57 (U5 snRNP specific) 
WDR51B                0.025   WD repeat domain 51B 
WDR51A                0.025   WD repeat domain 51A isoform 3 
WDR5B                 0.025   WD repeat domain 5B 
MORG1                 0.022   mitogen-activated protein kinase organizer 1 
MORG1                 0.022   mitogen-activated protein kinase organizer 1 
FMNL2                 0.021   formin-like 2 
WDR37                 0.020   WD repeat domain 37 
RBBP5                 0.020   retinoblastoma binding protein 5 
TBL1XR1               0.020   transducin (beta)-like 1 X-linked receptor 1 
WDR61                 0.019   WD repeat domain 61 
GNB4                  0.019   guanine nucleotide-binding protein, beta-4 subunit [...
CHAF1B                0.019   chromatin assembly factor 1 subunit B 
TBL1X                 0.019   transducin beta-like 1X isoform b 
TBL1X                 0.019   transducin beta-like 1X isoform b 
TBL1X                 0.019   transducin beta-like 1X isoform a 
TBL1X                 0.019   transducin beta-like 1X isoform a 
PRPF19                0.019   PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom...
GNB1                  0.018   guanine nucleotide-binding protein, beta-1 subunit [...
SPAG16                0.018   sperm associated antigen 16 isoform 1 
WDSUB1                0.018   WD repeat, sterile alpha motif and U-box domain con...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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