Guide to the Human Genome
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Name: R3HCC1 Sequence: fasta or formatted (253aa) NCBI GI: 209870067
Description:

R3H domain and coiled-coil containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         16           2
 C cysteine            1.2          3           1
 D aspartate           5.9         15           2
 E glutamate          13.8         35           4
 F phenylalanine       3.2          8           1
 G glycine             6.3         16           1
 H histidine           1.6          4           1
 I isoleucine          3.2          8           1
 K lysine              7.9         20           3
 L leucine            13.0         33           2
 M methionine          1.2          3           1
 N asparagine          1.2          3           1
 P proline             6.7         17           2
 Q glutamine           5.1         13           1
 R arginine            5.5         14           2
 S serine              5.5         14           2
 T threonine           5.9         15           1
 V valine              5.1         13           2
 W tryptophan          0.4          1           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   R3H domain and coiled-coil containing 1 
C10orf28              0.221   growth inhibition and differentiation related prote...
CENPE                 0.027   centromere protein E 
MYST4                 0.023   MYST histone acetyltransferase (monocytic leukemia)...
ZFHX3                 0.021   AT-binding transcription factor 1 
PDE4DIP               0.021   phosphodiesterase 4D interacting protein isoform 5 [...
EEA1                  0.021   early endosome antigen 1, 162kD 
ASPH                  0.019   aspartate beta-hydroxylase isoform c 
ASPH                  0.019   aspartate beta-hydroxylase isoform b 
ASPH                  0.019   aspartate beta-hydroxylase isoform a 
TRIM44                0.019   DIPB protein 
ABCF1                 0.019   ATP-binding cassette, sub-family F, member 1 isoform...
ESF1                  0.019   ABT1-associated protein 
TPM2                  0.019   tropomyosin 2 (beta) isoform 1 
ARX                   0.019   aristaless related homeobox 
EIF5B                 0.019   eukaryotic translation initiation factor 5B 
BRD2                  0.017   bromodomain containing 2 
BRD2                  0.017   bromodomain containing 2 
MYT1                  0.017   myelin transcription factor 1 
EPB41L2               0.017   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.017   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.017   erythrocyte membrane protein band 4.1-like 2 isoform ...
KIAA0427              0.017   hypothetical protein LOC9811 isoform 1 
FLJ32682              0.017   hypothetical protein LOC220081 
MXRA7                 0.017   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.017   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.017   transmembrane anchor protein 1 isoform 1 
BMS1                  0.017   BMS1-like, ribosome assembly protein 
KCNK10                0.017   potassium channel, subfamily K, member 10 isoform 3 ...
KCNK10                0.017   potassium channel, subfamily K, member 10 isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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