Guide to the Human Genome
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Name: GPNMB Sequence: fasta or formatted (572aa) NCBI GI: 52694752
Description:

glycoprotein (transmembrane) nmb isoform a precursor

Referenced in:

Lysosomes and Related Organelles

Other entries for this name:
alt prot [560aa] glycoprotein (transmembrane) nmb isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         28           3
 C cysteine            2.3         13           1
 D aspartate           5.6         32           2
 E glutamate           4.2         24           1
 F phenylalanine       4.5         26           2
 G glycine             6.1         35           2
 H histidine           2.4         14           2
 I isoleucine          4.5         26           2
 K lysine              4.2         24           2
 L leucine             8.6         49           3
 M methionine          1.7         10           1
 N asparagine          7.3         42           1
 P proline             7.7         44           7
 Q glutamine           3.0         17           1
 R arginine            4.5         26           2
 S serine              7.3         42           2
 T threonine           6.8         39           2
 V valine              8.7         50           2
 W tryptophan          1.9         11           1
 Y tyrosine            3.5         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycoprotein (transmembrane) nmb isoform a precursor... 
GPNMB                 0.972   glycoprotein (transmembrane) nmb isoform b precursor ...
SILV                  0.121   silver homolog 
TMEM130               0.018   transmembrane protein 130 isoform c 
TMEM130               0.018   transmembrane protein 130 isoform a 
TMEM130               0.018   transmembrane protein 130 isoform b 
PELP1                 0.014   proline, glutamic acid and leucine rich protein 1 [...
ZNF219                0.013   zinc finger protein 219 
ZNF219                0.013   zinc finger protein 219 
ZNF219                0.013   zinc finger protein 219 
DAAM2                 0.012   dishevelled associated activator of morphogenesis 2 ...
RAPH1                 0.011   Ras association and pleckstrin homology domains 1 is...
PCLO                  0.011   piccolo isoform 2 
PCLO                  0.011   piccolo isoform 1 
ZFPM1                 0.011   zinc finger protein, multitype 1 
WASL                  0.010   Wiskott-Aldrich syndrome gene-like protein 
FMNL2                 0.010   formin-like 2 
C19orf26              0.010   downstream of Stk11 
SMARCA5               0.010   SWI/SNF-related matrix-associated actin-dependent re...
PKD1                  0.010   polycystin 1 isoform 2 precursor 
PKD1                  0.010   polycystin 1 isoform 1 precursor 
CTNND2                0.010   catenin (cadherin-associated protein), delta 2 (neur...
WIPF3                 0.010   WAS/WASL interacting protein family, member 3 [Homo...
RANBP9                0.009   RAN binding protein 9 
LOC100291632          0.009   PREDICTED: hypothetical protein XP_002344527 
LOC100288471          0.009   PREDICTED: hypothetical protein 
LOC100288471          0.009   PREDICTED: hypothetical protein XP_002343034 
KIAA1429              0.009   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.009   hypothetical protein LOC25962 isoform 2 
MEF2A                 0.009   myocyte enhancer factor 2A isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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