PARN 29095

Name: PARN	Sequence: fasta or formatted (639aa)		NCBI GI: 4505611
Description: poly(A)-specific ribonuclease (deadenylation nuclease) isoform 1		Referenced in: Polyadenylation RNases and RNA Stability
Other entries for this name: alt prot [578aa] poly(A)-specific ribonuclease (deadenylation nuclease) isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.2 33 1 C cysteine 1.4 9 1 D aspartate 5.5 35 2 E glutamate 8.9 57 3 F phenylalanine 5.9 38 2 G glycine 4.2 27 1 H histidine 2.0 13 1 I isoleucine 5.3 34 2 K lysine 8.8 56 2 L leucine 8.1 52 2 M methionine 1.7 11 1 N asparagine 4.5 29 2 P proline 5.5 35 2 Q glutamine 5.0 32 2 R arginine 4.1 26 2 S serine 8.9 57 3 T threonine 5.2 33 2 V valine 4.7 30 2 W tryptophan 0.9 6 1 Y tyrosine 4.1 26 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 poly(A)-specific ribonuclease (deadenylation nuclease... PARN 0.905 poly(A)-specific ribonuclease (deadenylation nuclea... PNLDC1 0.104 poly(A)-specific ribonuclease (PARN)-like domain con... TOE1 0.025 target of EGR1, member 1 (nuclear) C10orf28 0.011 growth inhibition and differentiation related prote... CAPRIN2 0.010 C1q domain containing 1 isoform 1 CAPRIN2 0.010 C1q domain containing 1 isoform 3 CAPRIN2 0.010 C1q domain containing 1 isoform 2 LOC727832 0.009 golgi autoantigen, golgin subfamily a-like MCM3 0.009 minichromosome maintenance complex component 3 LOC645202 0.008 PREDICTED: hypothetical protein LOC645202 TCHH 0.008 trichohyalin CNOT8 0.008 CCR4-NOT transcription complex, subunit 8 LOC283767 0.008 golgi autoantigen, golgin subfamily a-like GOLGA6D 0.008 golgi autoantigen, golgin subfamily a, 6D GOLGA6C 0.008 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... LOC400352 0.008 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.008 PREDICTED: similar to Putative golgin subfamily A m... GOLGA6 0.008 golgi autoantigen, golgin subfamily a, 6 LOC100133758 0.007 PREDICTED: hypothetical protein, partial LOC440243 0.007 PREDICTED: Putative golgin subfamily A member 6-lik... GOLGA6B 0.007 golgi autoantigen, golgin subfamily a, 6B LRRFIP2 0.007 leucine rich repeat (in FLII) interacting protein 2 i... PPFIBP2 0.006 PTPRF interacting protein, binding protein 2 (lipri... LOC283685 0.006 PREDICTED: golgi autoantigen, golgin subfamily a-li... CCDC91 0.006 GGA binding partner XPOT 0.006 tRNA exportin DCAF8L2 0.006 DDB1 and CUL4 associated factor 8-like 2 TNNT3 0.006 troponin T3, skeletal, fast isoform 3 TNNT3 0.006 troponin T3, skeletal, fast isoform 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.