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Search of human proteins with 13994300
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13994300 transmembrane protein 120A [Homo sapiens]
(343 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13994300 transmembrane protein 120A [Homo sapiens] 715 0.0
gi|212720630 transmembrane protein 120B [Homo sapiens] 499 e-141
gi|14165274 golgi-associated microtubule-binding protein HOOK3 [... 38 0.012
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 36 0.044
gi|238908495 similar to pleckstrin homology domain protein (5V32... 35 0.098
gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens] 35 0.098
gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens] 35 0.098
gi|7705415 hook homolog 1 [Homo sapiens] 35 0.13
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens] 34 0.17
gi|41352705 kinesin family member 3C [Homo sapiens] 33 0.28
gi|12232379 elongation of very long chain fatty acids-like 4 [Ho... 33 0.37
gi|239755818 PREDICTED: hypothetical protein isoform 2 [Homo sap... 33 0.48
gi|239755816 PREDICTED: hypothetical protein isoform 1 [Homo sap... 33 0.48
gi|239755814 PREDICTED: hypothetical protein isoform 3 [Homo sap... 33 0.48
gi|14318422 keratin 86 [Homo sapiens] 33 0.48
gi|89357932 keratin 5b [Homo sapiens] 32 0.63
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens] 32 0.63
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 32 0.63
gi|33188443 microfilament and actin filament cross-linker protei... 32 0.83
gi|33188445 microfilament and actin filament cross-linker protei... 32 0.83
gi|34878904 synaptonemal complex protein 1 [Homo sapiens] 32 0.83
gi|71061468 centromere protein E [Homo sapiens] 32 0.83
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 32 0.83
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens] 32 0.83
gi|169790853 keratin, hair, basic, 1 [Homo sapiens] 32 0.83
gi|169790841 keratin 83 [Homo sapiens] 32 0.83
gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens] 32 1.1
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 31 1.4
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 31 1.4
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 31 1.4
>gi|13994300 transmembrane protein 120A [Homo sapiens]
Length = 343
Score = 715 bits (1846), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MQPPPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQE 60
MQPPPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQE
Sbjct: 1 MQPPPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQE 60
Query: 61 LALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 120
LALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL
Sbjct: 61 LALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 120
Query: 121 LSKQAKFAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 180
LSKQAKFAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES
Sbjct: 121 LSKQAKFAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 180
Query: 181 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 240
ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY
Sbjct: 181 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 240
Query: 241 QSGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLAQDP 300
QSGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLAQDP
Sbjct: 241 QSGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLAQDP 300
Query: 301 QCKEWQVLMCGFPFLLLFLGNFFTTLRVVHHKFHSQRHGSKKD 343
QCKEWQVLMCGFPFLLLFLGNFFTTLRVVHHKFHSQRHGSKKD
Sbjct: 301 QCKEWQVLMCGFPFLLLFLGNFFTTLRVVHHKFHSQRHGSKKD 343
>gi|212720630 transmembrane protein 120B [Homo sapiens]
Length = 339
Score = 499 bits (1286), Expect = e-141
Identities = 237/336 (70%), Positives = 278/336 (82%)
Query: 7 GPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALK 66
G L C R+W +L+ +FQ +QETHR+Y+ KLEEL LQ C+SSI++QKK L++L L L+
Sbjct: 3 GQLERCEREWHELEGEFQELQETHRIYKQKLEELAALQTLCSSSISKQKKHLKDLKLTLQ 62
Query: 67 KCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAK 126
+CK E Q++ +KERQ +FFDMEAYLPKKNGLYL+LVLGNVNVTLLS QAK
Sbjct: 63 RCKRHASREEAELVQQMAANIKERQDVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAK 122
Query: 127 FAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNG 186
FAYKDEYEKFKLYLTIIL+L + CRF+L+ RVTD FNFLLVWYYCTLTIRESILI+NG
Sbjct: 123 FAYKDEYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNG 182
Query: 187 SRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLY 246
SRIKGWWV HHYVSTFLSGVMLTWP+G +YQKFRNQFL+FS++QS VQFLQYYYQ GCLY
Sbjct: 183 SRIKGWWVSHHYVSTFLSGVMLTWPNGPIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLY 242
Query: 247 RLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLAQDPQCKEWQ 306
RLRALGER+ +DLTVEGFQSWMWRGLTFLLPFLF GHFWQL+NA+TLF L+ +C+EWQ
Sbjct: 243 RLRALGERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELSSHEECREWQ 302
Query: 307 VLMCGFPFLLLFLGNFFTTLRVVHHKFHSQRHGSKK 342
V + F FL+LFLGNF TTL+VVH K R +K+
Sbjct: 303 VFVLAFTFLILFLGNFLTTLKVVHAKLQKNRGKTKQ 338
>gi|14165274 golgi-associated microtubule-binding protein HOOK3
[Homo sapiens]
Length = 718
Score = 38.1 bits (87), Expect = 0.012
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 17 EDLQQDFQN----IQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKKCKPSL 72
EDL+ F N I+E R K EE+ +++ R KK L++ ++ P
Sbjct: 570 EDLEPRFNNSSLKIEELQEALRKKEEEMKQMEE-------RYKKYLEKAKSVIRTLDPKQ 622
Query: 73 PAEAEGAAQELENQMKERQGLFFDMEAYLPKKNG------LYLSLVLGNVNVTLLSKQAK 126
A Q L+NQ++ER LF +E K Y+ N+ +TL K A+
Sbjct: 623 NQGAAPEIQALKNQLQERDRLFHSLEKEYEKTKSQREMEEKYIVSAWYNMGMTLHKKAAE 682
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 36.2 bits (82), Expect = 0.044
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 9 LGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKKC 68
L D + + +Q++ +++ +L R+K+ EL K +N C+ + +++ +Q+L L
Sbjct: 1252 LTDAKKQIKQVQKEVSVMRDEDKLLRIKINELEKKKNQCSQELDMKQRTIQQLKEQLNNQ 1311
Query: 69 KPSLPAEAEGAAQELENQMKE 89
K E A Q+ E K+
Sbjct: 1312 K------VEEAIQQYERACKD 1326
>gi|238908495 similar to pleckstrin homology domain protein (5V327)
[Homo sapiens]
Length = 506
Score = 35.0 bits (79), Expect = 0.098
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 2 QPPPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQEL 61
QPPP G L LR E+ Q Q ++E +L E+ K + ++ +++
Sbjct: 277 QPPPSGGLHSNLRQIEEKMQ--QLLEE-----KLLAEKRMKENEERSRALEEEREFYSSQ 329
Query: 62 ALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLG 114
+ AL+ L AE + A +EL+ ++K R D+E L + G SL G
Sbjct: 330 SQALQNSLQELTAEKQQAERELKAEVKVR----MDLERRLREAEGALRSLEQG 378
Score = 31.6 bits (70), Expect = 1.1
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 20 QQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKKCKPSLPAEAEGA 79
+Q F+ + + R+ + +++ +L C + ++KK L+ L +L++ L E +
Sbjct: 198 KQQFEEVVQELRMEQEQIKRELELTARCLKGVEQEKKELRHLTESLQQTLEELSIEKKKT 257
Query: 80 AQELENQMKERQGLFFDMEAYLPKKNGLYLSL 111
+ LE Q L E P GL+ +L
Sbjct: 258 LEMLEENENHLQTLANQSE-QPPPSGGLHSNL 288
>gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]
Length = 1036
Score = 35.0 bits (79), Expect = 0.098
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 11 DCLRDWEDLQQDFQNIQETHRLYRLKLE---ELTKLQNNCTSSITRQKKRLQELALALKK 67
D L + +++++ NI+E RLYR LE E +N +S+ +Q+ +LQE + K+
Sbjct: 318 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN-LASVLQQQGKLQEALMHYKE 376
Query: 68 CKPSLPAEAEGAAQELENQMKERQGLFFDMEAY 100
P A+ A + N +KE Q + ++ Y
Sbjct: 377 AIRISPTFAD-AYSNMGNTLKEMQDVQGALQCY 408
>gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]
Length = 1046
Score = 35.0 bits (79), Expect = 0.098
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 11 DCLRDWEDLQQDFQNIQETHRLYRLKLE---ELTKLQNNCTSSITRQKKRLQELALALKK 67
D L + +++++ NI+E RLYR LE E +N +S+ +Q+ +LQE + K+
Sbjct: 328 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN-LASVLQQQGKLQEALMHYKE 386
Query: 68 CKPSLPAEAEGAAQELENQMKERQGLFFDMEAY 100
P A+ A + N +KE Q + ++ Y
Sbjct: 387 AIRISPTFAD-AYSNMGNTLKEMQDVQGALQCY 418
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 34.7 bits (78), Expect = 0.13
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 13 LRDWEDLQQDFQNIQETHRLY---RLKLEELTKLQNNCTSSITRQKKRLQELALAL---K 66
L+D DL++ + +QET+ +Y + LEE K N + + K+++Q+L + L
Sbjct: 330 LQDLNDLRKQVKTLQETNMMYMHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSES 389
Query: 67 KCKPSLPAEAEGAAQELENQMKERQGL 93
K +L E + ++ E +KE++ L
Sbjct: 390 KRADTLAFEMKRLEEKHEALLKEKERL 416
Score = 28.9 bits (63), Expect = 7.0
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 24 QNIQETHRLYRLK--LEELTKLQNNCTSSITRQKKRLQELALALKKCKPSLPAEAEGAAQ 81
Q E R+ L+ LE+ + N + K+R++EL ++ + SL + +G+
Sbjct: 481 QEGSENERIEELQEQLEQKHRKMNELETEQRLSKERIRELQQQIEDLQKSL--QEQGSKS 538
Query: 82 ELENQMKERQGLFFDMEAY------LPKKNGLYLSLVLG-NVNVTLLSK-QAKFAYKDE- 132
E E+ K +Q L ME L KK L L N NV +++ +A KDE
Sbjct: 539 EGESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDINQNVQKINELEAALQKKDED 598
Query: 133 ----YEKFKLYL 140
E++K+YL
Sbjct: 599 MKAMEERYKMYL 610
>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
Length = 234
Score = 34.3 bits (77), Expect = 0.17
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 3 PPPPGPLGDCLRDWEDL--QQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQE 60
PPPPGP DW L Q ++ + R L+ EL Q ++ R+++ LQE
Sbjct: 116 PPPPGPAAAPEGDWARLLEQMGALAVRGSRRERELERRELAVEQGE--RALERRRRALQE 173
Query: 61 LALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKN 105
A + + L AE E L + + L + A P K+
Sbjct: 174 EERAAAQARRELQAEREALQARLRDVSRREGALGWAPAAPPPLKD 218
>gi|41352705 kinesin family member 3C [Homo sapiens]
Length = 793
Score = 33.5 bits (75), Expect = 0.28
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 4 PPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELAL 63
PP P G + W ++D N HR + LE + L+ N + + QK+RL+E
Sbjct: 418 PPGYPEGPVIEAWVAEEEDDNN--NNHRPPQPILE--SALEKNMENYLQEQKERLEEEKA 473
Query: 64 ALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNV 118
A++ + + E + +E E +++ + E K + L++G N+
Sbjct: 474 AIQDDRSLVSEEKQKLLEEKEKMLEDLRREQQATELLAAKYKAMESKLLIGGRNI 528
>gi|12232379 elongation of very long chain fatty acids-like 4 [Homo
sapiens]
Length = 314
Score = 33.1 bits (74), Expect = 0.37
Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 31/188 (16%)
Query: 148 SFTCRFL-LNSRVTDAAFNFLLVWYYCTLTIRES-----ILINNGSRIKGWWVFHHYVST 201
S+ C+ + ++ V + L WY+ + + IL +++ V+HH
Sbjct: 107 SYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMF 166
Query: 202 FLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTV 261
L + + W G Q + SF+ + Y Y Y L A G
Sbjct: 167 TLWWIGIKWVAG-------GQAFFGAQLNSFIHVIMYSY-----YGLTAFGP-------- 206
Query: 262 EGFQSWMW--RGLTFLLPFLFFGHFWQLFNALTLFNLAQDPQCKEWQVLMCGFPFLLLFL 319
Q ++W R LT L F H AL+L+ P+ W ++ F+ LFL
Sbjct: 207 -WIQKYLWWKRYLTMLQLIQF--HVTIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFL 263
Query: 320 GNFFTTLR 327
+ T +
Sbjct: 264 NFYIRTYK 271
>gi|239755818 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 486
Score = 32.7 bits (73), Expect = 0.48
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 13 LRDWEDLQQDFQNIQETHRLY-RLKLE-ELTKLQNNCTSSITRQKKRLQELALALKKCKP 70
+R E L++ + I E +R+ RL E E K QN+ + Q ++ E AL+ +CK
Sbjct: 309 IRHGETLRRTKEEINELNRMIQRLTAEVENAKCQNSKLEAAVAQSEQQGEAALSDARCK- 367
Query: 71 SLPAEAEGAAQ-----------ELENQMKERQGLFFDMEAYLPKKNGLYLSLV--LGNVN 117
AE EGA Q E + M + GL ++ Y G L +G+VN
Sbjct: 368 --LAELEGALQKAKQDMACLIREYQEVMNSKLGLDIEIATYRRLLEGEEQRLCEGVGSVN 425
Query: 118 VTLLSKQ 124
V + S +
Sbjct: 426 VCVSSSR 432
>gi|239755816 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 486
Score = 32.7 bits (73), Expect = 0.48
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 13 LRDWEDLQQDFQNIQETHRLY-RLKLE-ELTKLQNNCTSSITRQKKRLQELALALKKCKP 70
+R E L++ + I E +R+ RL E E K QN+ + Q ++ E AL+ +CK
Sbjct: 309 IRHGETLRRTKEEINELNRMIQRLTAEVENAKCQNSKLEAAVAQSEQQGEAALSDARCK- 367
Query: 71 SLPAEAEGAAQ-----------ELENQMKERQGLFFDMEAYLPKKNGLYLSLV--LGNVN 117
AE EGA Q E + M + GL ++ Y G L +G+VN
Sbjct: 368 --LAELEGALQKAKQDMACLIREYQEVMNSKLGLDIEIATYRRLLEGEEQRLCEGVGSVN 425
Query: 118 VTLLSKQ 124
V + S +
Sbjct: 426 VCVSSSR 432
>gi|239755814 PREDICTED: hypothetical protein isoform 3 [Homo
sapiens]
Length = 486
Score = 32.7 bits (73), Expect = 0.48
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 13 LRDWEDLQQDFQNIQETHRLY-RLKLE-ELTKLQNNCTSSITRQKKRLQELALALKKCKP 70
+R E L++ + I E +R+ RL E E K QN+ + Q ++ E AL+ +CK
Sbjct: 309 IRHGETLRRTKEEINELNRMIQRLTAEVENAKCQNSKLEAAVAQSEQQGEAALSDARCK- 367
Query: 71 SLPAEAEGAAQ-----------ELENQMKERQGLFFDMEAYLPKKNGLYLSLV--LGNVN 117
AE EGA Q E + M + GL ++ Y G L +G+VN
Sbjct: 368 --LAELEGALQKAKQDMACLIREYQEVMNSKLGLDIEIATYRRLLEGEEQRLCEGVGSVN 425
Query: 118 VTLLSKQ 124
V + S +
Sbjct: 426 VCVSSSR 432
>gi|14318422 keratin 86 [Homo sapiens]
Length = 486
Score = 32.7 bits (73), Expect = 0.48
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 13 LRDWEDLQQDFQNIQETHRLY-RLKLE-ELTKLQNNCTSSITRQKKRLQELALALKKCKP 70
+R E L++ + I E +R+ RL E E K QN+ + Q ++ E AL+ +CK
Sbjct: 309 IRHGETLRRTKEEINELNRMIQRLTAEVENAKCQNSKLEAAVAQSEQQGEAALSDARCK- 367
Query: 71 SLPAEAEGAAQ-----------ELENQMKERQGLFFDMEAYLPKKNGLYLSLV--LGNVN 117
AE EGA Q E + M + GL ++ Y G L +G+VN
Sbjct: 368 --LAELEGALQKAKQDMACLIREYQEVMNSKLGLDIEIATYRRLLEGEEQRLCEGVGSVN 425
Query: 118 VTLLSKQ 124
V + S +
Sbjct: 426 VCVSSSR 432
>gi|89357932 keratin 5b [Homo sapiens]
Length = 520
Score = 32.3 bits (72), Expect = 0.63
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 20 QQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKKCKPSLPAEAEGA 79
Q +Q +Q + +L+ +++E TK+Q S + ++ +RLQ LKK SL A A
Sbjct: 305 QTKYQELQVSAQLHGDRMQE-TKVQ---ISQLHQEIQRLQSQTENLKKQNASLQAAITDA 360
Query: 80 AQELENQMKERQGLFFDMEAYL 101
Q E +K+ Q ++EA L
Sbjct: 361 EQRGELALKDAQAKVDELEAAL 382
>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
Length = 971
Score = 32.3 bits (72), Expect = 0.63
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 13 LRDWEDLQQDFQN-----IQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKK 67
LR + LQ F+ +++ +R +++EL K Q + ++S+ + +++ +EL
Sbjct: 49 LRSFGQLQVQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELH----- 103
Query: 68 CKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLY 108
E E + LE ER+ L D E L K Y
Sbjct: 104 -----RMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFY 139
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 32.3 bits (72), Expect = 0.63
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 13 LRDWEDLQQDFQN-----IQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKK 67
LR + LQ F+ +++ +R +++EL K Q + ++S+ + +++ +EL
Sbjct: 169 LRSFGQLQVQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELH----- 223
Query: 68 CKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLY 108
E E + LE ER+ L D E L K Y
Sbjct: 224 -----RMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFY 259
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 32.0 bits (71), Expect = 0.83
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 17 EDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKKCKPSL-PAE 75
++L++DF +Q+T ++E K ++C + +K ++ LK+ + S+ P E
Sbjct: 2737 QNLRKDFTELQKT-------VKEREKDASSCQEQLDEFRKLVRTFQKWLKETEGSIPPTE 2789
Query: 76 AEGAAQELENQMKERQGLFFD 96
+A+ELE Q++ + L D
Sbjct: 2790 TSMSAKELEKQIEHLKSLLDD 2810
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 32.0 bits (71), Expect = 0.83
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 17 EDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKKCKPSL-PAE 75
++L++DF +Q+T ++E K ++C + +K ++ LK+ + S+ P E
Sbjct: 2235 QNLRKDFTELQKT-------VKEREKDASSCQEQLDEFRKLVRTFQKWLKETEGSIPPTE 2287
Query: 76 AEGAAQELENQMKERQGLFFD 96
+A+ELE Q++ + L D
Sbjct: 2288 TSMSAKELEKQIEHLKSLLDD 2308
>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
Length = 976
Score = 32.0 bits (71), Expect = 0.83
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 36 KLEELTKLQNNCTSSITRQKKRLQELALALKKCK--PSLPAEAEGAAQELENQMKERQGL 93
+LEE+TKL NN + KK L E L + K + E +G QEL ++ R+
Sbjct: 418 ELEEMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKE 477
Query: 94 FFDMEAYL 101
D+E L
Sbjct: 478 VHDLEIQL 485
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 32.0 bits (71), Expect = 0.83
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 15 DWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKKCK-PSLP 73
D+++L D++ ++ LKL+E L ++ R+ K+ QE+ L + +L
Sbjct: 506 DYDNLVLDYEQLRTEKEEMELKLKEKNDLDE--FEALERKTKKDQEMQLIHEISNLKNLV 563
Query: 74 AEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 120
AE Q+LEN++ + L + E + K S L N+ + L
Sbjct: 564 KHAEVYNQDLENELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDL 610
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 32.0 bits (71), Expect = 0.83
Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 37/157 (23%)
Query: 8 PLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTK-----------------------LQ 44
P GD R+W + Q+ + ++ + L+ E K L
Sbjct: 1962 PSGDFSREWAEAQRMMRELRNRNFGKHLREAEADKRESQLLLNRIRTWQKTHQGENNGLA 2021
Query: 45 NNCTSSITRQKKRLQEL------ALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDME 98
N+ S+ + +L +L A A K L E E A ++ Q+KE L D
Sbjct: 2022 NSIRDSLNEYEAKLSDLRARLQEAAAQAKQANGLNQENERALGAIQRQVKEINSLQSDFT 2081
Query: 99 AYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKDEYEK 135
YL + SL+ N+ + L+ K K EYEK
Sbjct: 2082 KYLTTADS---SLLQTNIALQLMEKSQK-----EYEK 2110
>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
Length = 1724
Score = 32.0 bits (71), Expect = 0.83
Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 37/157 (23%)
Query: 8 PLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTK-----------------------LQ 44
P GD R+W + Q+ + ++ + L+ E K L
Sbjct: 353 PSGDFSREWAEAQRMMRELRNRNFGKHLREAEADKRESQLLLNRIRTWQKTHQGENNGLA 412
Query: 45 NNCTSSITRQKKRLQEL------ALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDME 98
N+ S+ + +L +L A A K L E E A ++ Q+KE L D
Sbjct: 413 NSIRDSLNEYEAKLSDLRARLQEAAAQAKQANGLNQENERALGAIQRQVKEINSLQSDFT 472
Query: 99 AYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKDEYEK 135
YL + SL+ N+ + L+ K K EYEK
Sbjct: 473 KYLTTADS---SLLQTNIALQLMEKSQK-----EYEK 501
>gi|169790853 keratin, hair, basic, 1 [Homo sapiens]
Length = 505
Score = 32.0 bits (71), Expect = 0.83
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 13 LRDWEDLQQDFQNIQETHRLY-RLKLE-ELTKLQNNCTSSITRQKKRLQELALALKKCKP 70
+R E L++ + I E +R+ RL E E K QN+ + Q ++ E AL+ +CK
Sbjct: 309 IRHGETLRRTKEEINELNRMIQRLTAEVENAKCQNSKLEAAVAQSEQQGEAALSDARCK- 367
Query: 71 SLPAEAEGAAQELENQM 87
AE EGA Q+ + M
Sbjct: 368 --LAELEGALQKAKQDM 382
>gi|169790841 keratin 83 [Homo sapiens]
Length = 493
Score = 32.0 bits (71), Expect = 0.83
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 13 LRDWEDLQQDFQNIQETHRLY-RLKLE-ELTKLQNNCTSSITRQKKRLQELALALKKCKP 70
+R E L++ + I E +R+ RL E E K QN+ + Q ++ E AL+ +CK
Sbjct: 314 IRHGETLRRTKEEINELNRMIQRLTAEVENAKCQNSKLEAAVAQSEQQGEAALSDARCK- 372
Query: 71 SLPAEAEGAAQELENQM 87
AE EGA Q+ + M
Sbjct: 373 --LAELEGALQKAKQDM 387
>gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]
Length = 1233
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 13 LRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQELALALKKCKPSL 72
LR+ E+ Q+ + ++E + LEE KL+ T + K+R+ E+ L + L
Sbjct: 425 LREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEINKELNQVMEQL 484
Query: 73 PAEAEGAAQELENQMKERQ 91
+A QE Q ++ +
Sbjct: 485 -GDARIDRQESSRQQRKAE 502
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform
4 [Homo sapiens]
Length = 3321
Score = 31.2 bits (69), Expect = 1.4
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 1 MQPPPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQE 60
++P LGD R WE L+ Q T LY LE K Q++ S T+ +
Sbjct: 453 LEPSATAKLGDLQRSWETLKNVISEKQRT--LYE-ALERQQKYQDSLQSISTKME----- 504
Query: 61 LALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSL 111
A+ LK + P + E+QM E Q L ++ + N L SL
Sbjct: 505 -AIELKLSESPEPGRSP------ESQMAEHQALMDEILMLQDEINELQSSL 548
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 31.2 bits (69), Expect = 1.4
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 1 MQPPPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQE 60
++P LGD R WE L+ Q T LY LE K Q++ S T+ +
Sbjct: 5858 LEPSATAKLGDLQRSWETLKNVISEKQRT--LYE-ALERQQKYQDSLQSISTKME----- 5909
Query: 61 LALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSL 111
A+ LK + P + E+QM E Q L ++ + N L SL
Sbjct: 5910 -AIELKLSESPEPGRSP------ESQMAEHQALMDEILMLQDEINELQSSL 5953
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 31.2 bits (69), Expect = 1.4
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 1 MQPPPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQE 60
++P LGD R WE L+ Q T LY LE K Q++ S T+ +
Sbjct: 5929 LEPSATAKLGDLQRSWETLKNVISEKQRT--LYE-ALERQQKYQDSLQSISTKME----- 5980
Query: 61 LALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSL 111
A+ LK + P + E+QM E Q L ++ + N L SL
Sbjct: 5981 -AIELKLSESPEPGRSP------ESQMAEHQALMDEILMLQDEINELQSSL 6024
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.141 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,328,452
Number of Sequences: 37866
Number of extensions: 562829
Number of successful extensions: 2848
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 2757
Number of HSP's gapped (non-prelim): 174
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.