Guide to the Human Genome
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Name: FLJ44817 Sequence: fasta or formatted (506aa) NCBI GI: 238908495
Description:

similar to pleckstrin homology domain protein (5V327)

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         31           2
 C cysteine            1.0          5           1
 D aspartate           2.0         10           1
 E glutamate          15.4         78           3
 F phenylalanine       3.2         16           2
 G glycine             3.4         17           2
 H histidine           2.0         10           1
 I isoleucine          3.4         17           2
 K lysine              8.7         44           3
 L leucine            11.5         58           2
 M methionine          3.6         18           1
 N asparagine          3.8         19           2
 P proline             3.2         16           3
 Q glutamine           7.5         38           2
 R arginine            7.5         38           3
 S serine              8.7         44           2
 T threonine           3.2         16           1
 V valine              3.4         17           2
 W tryptophan          1.0          5           1
 Y tyrosine            1.8          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   similar to pleckstrin homology domain protein (5V32... 
CENPE                 0.059   centromere protein E 
MYH9                  0.059   myosin, heavy polypeptide 9, non-muscle 
DEF6                  0.059   differentially expressed in FDCP 6 homolog 
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH8                  0.057   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH2                  0.056   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.056   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH1                  0.055   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH13                 0.055   myosin, heavy polypeptide 13, skeletal muscle [Homo...
INCENP                0.054   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.054   inner centromere protein antigens 135/155kDa isofor...
TCHH                  0.054   trichohyalin 
GRIPAP1               0.053   GRIP1 associated protein 1 isoform 1 
LOC100133758          0.051   PREDICTED: hypothetical protein, partial 
MYH4                  0.051   myosin, heavy polypeptide 4, skeletal muscle 
MYH3                  0.051   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH15                 0.051   myosin, heavy polypeptide 15 
EEA1                  0.050   early endosome antigen 1, 162kD 
CCDC88A               0.050   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.050   coiled-coil domain containing 88A isoform 1 
CGNL1                 0.050   cingulin-like 1 
MYH6                  0.049   myosin heavy chain 6 
LOC283685             0.048   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH10                 0.048   myosin, heavy polypeptide 10, non-muscle 
CCDC150               0.048   coiled-coil domain containing 150 
GCC2                  0.048   GRIP and coiled-coil domain-containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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