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Search of human proteins with 7662645
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7662645 mitochondrial ribosomal protein S18B [Homo sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7662645 mitochondrial ribosomal protein S18B [Homo sapiens] 546 e-156
gi|7705630 mitochondrial ribosomal protein S18C [Homo sapiens] 51 1e-06
gi|239757822 PREDICTED: similar to mitochondrial ribosomal prote... 48 1e-05
gi|169216268 PREDICTED: similar to mitochondrial ribosomal prote... 48 1e-05
gi|239746839 PREDICTED: hypothetical protein XP_002344238 [Homo ... 48 1e-05
gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens] 45 6e-05
gi|33286436 gametogenetin [Homo sapiens] 42 7e-04
gi|148276998 zinc finger protein 628 [Homo sapiens] 39 0.004
gi|239758021 PREDICTED: hypothetical protein [Homo sapiens] 35 0.065
gi|239741335 PREDICTED: hypothetical protein XP_002342177 [Homo ... 35 0.065
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 33 0.25
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 33 0.25
gi|74272287 matrix metalloproteinase 9 preproprotein [Homo sapiens] 32 0.72
gi|226061853 TatD DNase domain containing 3 isoform 5 [Homo sapi... 32 0.72
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 32 0.72
gi|148539870 histone deacetylase 7 isoform d [Homo sapiens] 31 1.2
gi|169234807 histone deacetylase 7 isoform a [Homo sapiens] 31 1.2
gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens] 31 1.2
gi|38373671 SEC24-related protein C [Homo sapiens] 31 1.2
gi|38373669 SEC24-related protein C [Homo sapiens] 31 1.2
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 30 1.6
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 30 1.6
gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo ... 30 2.1
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 30 2.1
gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 30 2.1
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 30 2.1
gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta... 30 2.7
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 30 2.7
gi|12597625 activating transcription factor 5 [Homo sapiens] 30 2.7
gi|56676337 transmembrane protein 28 [Homo sapiens] 30 2.7
>gi|7662645 mitochondrial ribosomal protein S18B [Homo sapiens]
Length = 258
Score = 546 bits (1407), Expect = e-156
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE 60
MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE
Sbjct: 1 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE 60
Query: 61 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV 120
SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV
Sbjct: 61 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV 120
Query: 121 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS 180
KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS
Sbjct: 121 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS 180
Query: 181 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP 240
HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP
Sbjct: 181 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP 240
Query: 241 RTPAEASSTGQTGPQSAL 258
RTPAEASSTGQTGPQSAL
Sbjct: 241 RTPAEASSTGQTGPQSAL 258
>gi|7705630 mitochondrial ribosomal protein S18C [Homo sapiens]
Length = 142
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 114 HVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLL 163
HVD++NV+LL QFV TG I+ TG+C K+ K +T+AI++A+ G +
Sbjct: 71 HVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFM 120
>gi|239757822 PREDICTED: similar to mitochondrial ribosomal protein
S18C [Homo sapiens]
Length = 141
Score = 47.8 bits (112), Expect = 1e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLL 163
C +C H V+++N +LL QFV TG I+ TG+C K+ K +T+AI++A+ G +
Sbjct: 64 CVLCGKH---VNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFM 119
>gi|169216268 PREDICTED: similar to mitochondrial ribosomal protein
S18C [Homo sapiens]
Length = 141
Score = 47.8 bits (112), Expect = 1e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLL 163
C +C H V+++N +LL QFV TG I+ TG+C K+ K +T+AI++A+ G +
Sbjct: 64 CVLCGKH---VNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFM 119
>gi|239746839 PREDICTED: hypothetical protein XP_002344238 [Homo
sapiens]
Length = 141
Score = 47.8 bits (112), Expect = 1e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLL 163
C +C H V+++N +LL QFV TG I+ TG+C K+ K +T+AI++A+ G +
Sbjct: 64 CVLCGKH---VNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFM 119
>gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens]
Length = 196
Score = 45.1 bits (105), Expect = 6e-05
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 105 CPICRDHKLH-VDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLL 163
CPICR + H ++ +V LL QF+ H G++ TG+C ++H+++ + ++ A GLL
Sbjct: 70 CPICRWNLKHKYNYDDVLLLSQFIRPHGGML-PRKITGLCQEEHRKIEECVKMAHRAGLL 128
Query: 164 IYHIPQV 170
H P++
Sbjct: 129 PNHRPRL 135
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 41.6 bits (96), Expect = 7e-04
Identities = 36/120 (30%), Positives = 48/120 (40%), Gaps = 24/120 (20%)
Query: 146 QHKRLTQAIQ-----KARDHGLLIYHIPQVEPRDLDFSTSH-----------GAVSATPP 189
Q RLT+ + A GL++ PQ P L + AVSA PP
Sbjct: 39 QAMRLTRGLGVWFPGSATPPGLMVPREPQASPSTLPLTLERPSPVMPPPEEAAAVSAPPP 98
Query: 190 AP--TLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPPRTPAEAS 247
AP TL+ G W++P + R+RRL + G PP P PP P + S
Sbjct: 99 APAGTLLPGPS-----KWQKPAGTPVPRIRRLLEAS-HRGQGDPPSLRPLKPPPPPRQLS 152
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 38.9 bits (89), Expect = 0.004
Identities = 44/145 (30%), Positives = 54/145 (37%), Gaps = 25/145 (17%)
Query: 104 PCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYT-GVCVKQHKRLTQAIQKARDH-G 161
PCP C F+N L + HTG PYT GVC K + T Q R H G
Sbjct: 145 PCPDCPKA-----FKNSSSLRRHRHVHTG---ERPYTCGVCGKSFTQSTNLRQHQRVHTG 196
Query: 162 LLIYHIPQVEPRDLDFSTS---HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRL-- 216
+ P P+ S++ H PAP S P P RE ++
Sbjct: 197 ERPFRCPLC-PKTFTHSSNLLLHQRTHGAAPAPGTASAAP--------PPQSREPGKVFV 247
Query: 217 -RRLYQGHLQEESGPPPESMPKMPP 240
Q HLQ S P P + P PP
Sbjct: 248 CDAYLQRHLQPHSPPAPPAPPPPPP 272
>gi|239758021 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 35.0 bits (79), Expect = 0.065
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 197 DPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPPRTPAEASSTG 250
D W W+ +QPP EL + L E PPPE P+ PP + TG
Sbjct: 80 DLWRLWWLRQQPPPPELQQPPEL-------EPQPPPELEPQQPPELTLQQEETG 126
>gi|239741335 PREDICTED: hypothetical protein XP_002342177 [Homo
sapiens]
Length = 214
Score = 35.0 bits (79), Expect = 0.065
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 197 DPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPPRTPAEASSTG 250
D W W+ +QPP EL + L E PPPE P+ PP + TG
Sbjct: 80 DLWRLWWLRQQPPPPELQQPPEL-------EPQPPPELEPQQPPELTLQQEETG 126
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 33.1 bits (74), Expect = 0.25
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 94 CIRRNKVVGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQA 153
C+ + V G C +CR+ H+D N+K C C HKR T+
Sbjct: 1424 CLCKENVEGTECNVCREGSFHLDPANLKGCTSCFCFGV--------NNQCHSSHKRRTKF 1475
Query: 154 IQKARDHGLLIYHIPQVEPRDLDFSTSHGAVS 185
+ +L +H+ + D+ S + G+ S
Sbjct: 1476 VD------MLGWHLETADRVDIPVSFNPGSNS 1501
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 33.1 bits (74), Expect = 0.25
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 94 CIRRNKVVGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQA 153
C+ + V G C +CR+ H+D N+K C C HKR T+
Sbjct: 1424 CLCKENVEGTECNVCREGSFHLDPANLKGCTSCFCFGV--------NNQCHSSHKRRTKF 1475
Query: 154 IQKARDHGLLIYHIPQVEPRDLDFSTSHGAVS 185
+ +L +H+ + D+ S + G+ S
Sbjct: 1476 VD------MLGWHLETADRVDIPVSFNPGSNS 1501
>gi|74272287 matrix metalloproteinase 9 preproprotein [Homo sapiens]
Length = 707
Score = 31.6 bits (70), Expect = 0.72
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 200 YPWYNWKQPP---ERELSRLRRLYQGHLQEESGPP----------PESMPKMPPRT-PAE 245
YP Y + + P + +++ +R LY + E PP P P PP P+E
Sbjct: 420 YPMYRFTEGPPLHKDDVNGIRHLYGPRPEPEPRPPTTTTPQPTAPPTVCPTGPPTVHPSE 479
Query: 246 ASSTGQTGPQSA 257
+ G TGP SA
Sbjct: 480 RPTAGPTGPPSA 491
>gi|226061853 TatD DNase domain containing 3 isoform 5 [Homo
sapiens]
Length = 281
Score = 31.6 bits (70), Expect = 0.72
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 4 SVLNTVLRRLPMLSLFRGSHRV--QVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLES 61
S+ +++R +LSLF ++ Q+PL ++C E DS + P ++EPW S
Sbjct: 190 SIPPSIIRSGQLLSLFSKKQKLVKQLPLTSICL----ETDSPALGPEKQVRNEPWNISIS 245
Query: 62 EEY 64
EY
Sbjct: 246 AEY 248
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 31.6 bits (70), Expect = 0.72
Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 26/88 (29%)
Query: 167 IPQVEPRDLDFSTSHGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQE 226
IP PR + S +HGA PP P + + P P PP
Sbjct: 145 IPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTP------PP----------------- 181
Query: 227 ESGPPPESMPKMPPRTPAEASSTGQTGP 254
PPP P +P +P + GP
Sbjct: 182 ---PPPPLPPPLPSSSPIKTPLVSPPGP 206
>gi|148539870 histone deacetylase 7 isoform d [Homo sapiens]
Length = 954
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 170 VEPRDLDFSTSHGAVSATPPAPTLVSGDP-WYPWYNWKQPPEREL-----SRLRRLYQGH 223
+EP + + +T S PP P+L S P +P P +L L R
Sbjct: 156 LEPLETEGATRSMLSSFLPPVPSLPSDPPEHFPLRKTVSEPNLKLRYKPKKSLERRKNPL 215
Query: 224 LQEESGPPPESMPKMPPRTPAEASSTGQTGPQS 256
L++ES PP S+ + P T ++S + + P S
Sbjct: 216 LRKESAPP--SLRRRPAETLGDSSPSSSSTPAS 246
>gi|169234807 histone deacetylase 7 isoform a [Homo sapiens]
Length = 991
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 170 VEPRDLDFSTSHGAVSATPPAPTLVSGDP-WYPWYNWKQPPEREL-----SRLRRLYQGH 223
+EP + + +T S PP P+L S P +P P +L L R
Sbjct: 156 LEPLETEGATRSMLSSFLPPVPSLPSDPPEHFPLRKTVSEPNLKLRYKPKKSLERRKNPL 215
Query: 224 LQEESGPPPESMPKMPPRTPAEASSTGQTGPQS 256
L++ES PP S+ + P T ++S + + P S
Sbjct: 216 LRKESAPP--SLRRRPAETLGDSSPSSSSTPAS 246
>gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens]
Length = 345
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 210 ERELSRLRRLYQGHLQEESGPPPESMPKMPPRTPAEASSTGQTGP 254
ER SRLR L G +S PP + P R PA ++++G P
Sbjct: 15 ERLGSRLRALRPGREPRQSEPPAQRGPPPSGRPPARSTASGHDRP 59
>gi|38373671 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 30.8 bits (68), Expect = 1.2
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 186 ATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRL----YQGHLQEESGPPPESMPKMPPR 241
+ PP P P YP Y+ + S + Y G + PP+ M + PP
Sbjct: 6 SVPPVPPFGQPQPIYPGYHQSSYGGQSGSTAPAIPYGAYNGPVPGYQQTPPQGMSRAPPS 65
Query: 242 TPAEASSTGQ 251
+ A +ST Q
Sbjct: 66 SGAPPASTAQ 75
>gi|38373669 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 30.8 bits (68), Expect = 1.2
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 186 ATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRL----YQGHLQEESGPPPESMPKMPPR 241
+ PP P P YP Y+ + S + Y G + PP+ M + PP
Sbjct: 6 SVPPVPPFGQPQPIYPGYHQSSYGGQSGSTAPAIPYGAYNGPVPGYQQTPPQGMSRAPPS 65
Query: 242 TPAEASSTGQ 251
+ A +ST Q
Sbjct: 66 SGAPPASTAQ 75
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 30.4 bits (67), Expect = 1.6
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 165 YHIPQVEPRDLDFSTSHGAVSATPPAPTLVSGDPW-YPWYNWKQPPERELSRLRRLYQGH 223
Y + P L FST A P P L G P +P + +PP + L + H
Sbjct: 488 YFPSRPHPGSLPFST------APPTFPALTPGFPGIFPPSLYPRPPLLPPTSLLKSPLNH 541
Query: 224 LQEESGPPPESMPKMPPRTPAEASSTGQT---GPQ 255
Q+ P P P +P + SS G T GP+
Sbjct: 542 TQDAKLPSPLGNPALPLVSAVSNSSQGTTAAAGPE 576
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 30.4 bits (67), Expect = 1.6
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 165 YHIPQVEPRDLDFSTSHGAVSATPPAPTLVSGDPW-YPWYNWKQPPERELSRLRRLYQGH 223
Y + P L FST A P P L G P +P + +PP + L + H
Sbjct: 488 YFPSRPHPGSLPFST------APPTFPALTPGFPGIFPPSLYPRPPLLPPTSLLKSPLNH 541
Query: 224 LQEESGPPPESMPKMPPRTPAEASSTGQT---GPQ 255
Q+ P P P +P + SS G T GP+
Sbjct: 542 TQDAKLPSPLGNPALPLVSAVSNSSQGTTAAAGPE 576
>gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo
sapiens]
Length = 1158
Score = 30.0 bits (66), Expect = 2.1
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 165 YHIPQVEPRDLDFSTSHGAVSATPPAPTLVSGDPW-YPWYNWKQPPERELSRLRRLYQGH 223
Y + P L FST A P P L G P +P + +PP + L + H
Sbjct: 389 YFPSRPHPGSLPFST------APPTFPALTPGFPGIFPPSLYPRPPLLPPTPLLKSPLNH 442
Query: 224 LQEESGPPPESMPKMPPRTPAEASSTGQT---GPQ 255
Q+ P P P +P + SS G T GP+
Sbjct: 443 TQDAKLPSPLGNPALPLVSAVSNSSQGTTAAAGPE 477
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 30.0 bits (66), Expect = 2.1
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 146 QHKRLTQAIQKARDHGLLIYH---IPQVEPRDLDFSTSHGAVSATPP-APTLVSGDPWYP 201
+H+ +T+A + A++H L+ H P S +H S PP A S P
Sbjct: 3554 KHRTITRAARNAKEHPSLLPHSACFPDPSTASTSQSAAHSNDSPPPPSAAAPSSASPHAS 3613
Query: 202 WYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPPRTPAEASSTGQTGPQSAL 258
+W Q R S P S P + + +SS +G Q ++
Sbjct: 3614 RKSWPQVVSR---------------ASAAKPPSFPPLSSSSTVTSSSCSTSGVQPSM 3655
>gi|60498978 elastin microfibril interfacer 2 [Homo sapiens]
Length = 1053
Score = 30.0 bits (66), Expect = 2.1
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 183 AVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPPRT 242
A + +PP P +P P + P R G PPE P PP +
Sbjct: 786 AKAPSPPPPAEAPKEPLQP----EPAPPRPSGPATAEDPGRRPVLPQRPPEERPPQPPGS 841
Query: 243 PAEASSTGQTGP 254
+ TGQ GP
Sbjct: 842 TGVIAETGQAGP 853
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 30.0 bits (66), Expect = 2.1
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 168 PQVEPRDLDFSTSHGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEE 227
PQ P+ S P P S P P +Q P+ + + H Q +
Sbjct: 205 PQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQLQQAPQPQ----QHQPHSHSQNQ 260
Query: 228 SGPPPESMPKMPPRTPAEASSTGQTGP 254
+ P P PP+ P+++ G P
Sbjct: 261 NQPSPTQQSSSPPQKPSQSPGHGLPSP 287
>gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
[Homo sapiens]
Length = 728
Score = 29.6 bits (65), Expect = 2.7
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Query: 151 TQAIQKARDHGLLIYHIPQVEPRDLDFSTSHGAVSAT--------PPAPTLVSGDPWYPW 202
T + +A L+ H+ +V R + A+ AT PP P+ S P
Sbjct: 213 TLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPS--SPPPGGAP 270
Query: 203 YNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPPRTPAEASSTGQTGPQS 256
+ P+ + +L Q HL+E+ PP PK P PA P S
Sbjct: 271 DGSEPSPDFPALLVEKLLQEHLEEQEVAPPALPPKPPKAKPAPTVLANGGSPPS 324
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 29.6 bits (65), Expect = 2.7
Identities = 27/82 (32%), Positives = 29/82 (35%), Gaps = 22/82 (26%)
Query: 185 SATPPAPT-------------LVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPP 231
SATPP PT L + PWY QPP R L Q PP
Sbjct: 233 SATPPPPTTRPPPIRPPFSHPLSAHLPWY-----FQPPPRPLPPRPPAAQPRPPPSPPPP 287
Query: 232 P----ESMPKMPPRTPAEASST 249
P +P PP P SST
Sbjct: 288 PPPPPSPLPPPPPPPPPTPSST 309
>gi|12597625 activating transcription factor 5 [Homo sapiens]
Length = 282
Score = 29.6 bits (65), Expect = 2.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 188 PPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHL--QEESGPPPESMPKMPP 240
PPAP+L P ++ QPP + L +Y + QEE G PP P+ PP
Sbjct: 136 PPAPSLPLS---LPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVGMPPLPPPQQPP 187
>gi|56676337 transmembrane protein 28 [Homo sapiens]
Length = 472
Score = 29.6 bits (65), Expect = 2.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 207 QPPERELSRLRRLYQGHLQEESGPPPESMPKMPPRTPAEASS-TGQTGPQ 255
+P RELS R G +E PP ++ +PP P E S+ G GP+
Sbjct: 68 RPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPR 117
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,732,529
Number of Sequences: 37866
Number of extensions: 687956
Number of successful extensions: 4110
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 4035
Number of HSP's gapped (non-prelim): 99
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.